Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01690 ATGCTTAACCAGCCATTACTCTGCGGTTCAAGATCCGCCACTCAATCCACACTCTTCGCTTCGGTTTTTTCCGGCGGTAACAACGCTGGGCGTAGTTCACTTGCCGGAAATTCGTTTGGCCGTGACGTCGGGTTGAAGTTTAGGAATCAAGCATCGGGAAGCAAATCGAATAATAATGGTCGTGGAGTTTTTAGTAAGACATGGGACCGTGCCAAGCCTAGGACAACAACTAATGTTTATGGTGGTCGTGCTCAAGAAGGAGTGCTTGAGGAAGAAACCTCCGAAGAGATAGAGAGCAAACCATCATGGAAAGTTTTCCCAGGCCAAGCATTTCCATTGGGTGTATCAGAAGTGGACAATGGGATCAATTTTGCTATTTTTTCACAGCATGCAACTGCTGTCACACTTTGTTTAGCTCTTCCTGAGAGGGAAAGCAACGGTACGATGGATGGTGGCATGATAGAACTGGCTTTGGATCCTTACTTGAACAAAACGGGGGACATTTGGCACATATGCATTGAGGATCTTCCTCGGAGCAATGTTCTGTATGGATATCGCATAGATGGACCACAAGACTGGGGTAAGGGCCATCGATTTGACAGCAGCATTGTGCTTGTTGATCCTTATGCAAAACTAATAGAAGGTCGAAGACATTTTGGGGATATTAGCATGAAGTTGTCGAAGTTTCTTGGCACATATGATTTTGACAGATTGCCTTTTGACTGGGGAGAAAATTACAAGCTTCCAAATATTCCTGAGAAAGATCTTGTTATATATGAGATGAATGTCCGTGCATTTACAATTGATGAATCTAGTGGGTTGGATAACAGCATTCGTGGCAGCTATCTTGGTGTGATTGAAAAGATTCCACACCTTCTAGAGCATGGTATCAATGCAGTGGAGTTGCTGCCTGTCTTTGAGTTTGACGAGTTGGAATTCCAGAGGCGTCCAAACCCCCGAGATCACATGATTAATACATGGGGTTATTCAACAATAAATTTCTTTGCTCCTATGAGTCGCTATGCTAGTGCTGGTGGAGGATCAGTTAATGCTTCCCAAGAGTTCAAGCAAATGGTTAAAGCCTTACATTCTGCTGGCATAGAGGTTATTTTGGATGTTGTCTACAATCATACTAATGAGGCTGATGACGCCAATCCTTACACTACTTCATTTCGTGGCATAGATAATAAGGTTTATTACATGCTGGACAATAAAGGGCAGTTGCTGAACTTTTCTGGCTGTGGAAATACTTTGAATTGTAACCATCCTGTGGTCATGGAGCTAATTCTTGACAGCCTAAGACACTGGGTTACTGAATATCATGTGGATGGATTTCGGTTTGATCTCGCAAGTGTCCTGTGTCGAGGAATCGATGGTTCCCCCCTTAATGCTCCTCCACTTATCAGGGCAATTGCTAAAGATGCAGTCTTGTCAAGGTGTAAAATTATTGCAGAGCCTTGGGACTGTGGTGGTCTCTATCTTGTTGGAAGTTTTCCAAATTGGGATCGGTGGGGTGAATGGAATGGGAAATATCGTGATGATGTACGTAAATTTATCAAGGGTGATTCTGGTATGAAGGGGAGCTTTGCAACTCGTGTTTCTGGGTCTTCTGATCTTTACAGAGTGAACAACCGTAGACCATATCATAGTATTAACTTTGTTATCGCACATGATGGATTCAGCTTACATGATCTTGTTTCATACAATTTCAAGCACAATGAAGCCAATGGGGAAGGTGGAAATGACGGAAGCAATGATAATTTTAGTTGGAATTGTGGTTTTGAAGGGGAAACTGATGATGCTAGTATAAGAGCTTTGCGGTCAAGGCAAATGAAAAACTTTCATTTGGCATTAATGATATCTCAGGGCACACCGATGATGCTAATGGGGGATGAATATGGCCATACTCGCTATGGAAATAACAATAGCTATGGGCATGATACTGCCATTAATAATTTCCTGTGGGATCAGGCAAGCATATAA 1983 0.4271 MLNQPLLCGSRSATQSTLFASVFSGGNNAGRSSLAGNSFGRDVGLKFRNQASGSKSNNNGRGVFSKTWDRAKPRTTTNVYGGRAQEGVLEEETSEEIESKPSWKVFPGQAFPLGVSEVDNGINFAIFSQHATAVTLCLALPERESNGTMDGGMIELALDPYLNKTGDIWHICIEDLPRSNVLYGYRIDGPQDWGKGHRFDSSIVLVDPYAKLIEGRRHFGDISMKLSKFLGTYDFDRLPFDWGENYKLPNIPEKDLVIYEMNVRAFTIDESSGLDNSIRGSYLGVIEKIPHLLEHGINAVELLPVFEFDELEFQRRPNPRDHMINTWGYSTINFFAPMSRYASAGGGSVNASQEFKQMVKALHSAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMLDNKGQLLNFSGCGNTLNCNHPVVMELILDSLRHWVTEYHVDGFRFDLASVLCRGIDGSPLNAPPLIRAIAKDAVLSRCKIIAEPWDCGGLYLVGSFPNWDRWGEWNGKYRDDVRKFIKGDSGMKGSFATRVSGSSDLYRVNNRRPYHSINFVIAHDGFSLHDLVSYNFKHNEANGEGGNDGSNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFLWDQASI. 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01690 660 FunFam Glycogen debranching enzyme 236 659 - -
Seca4g01690 660 SMART aamy 260 659 IPR006047 GO:0005975
Seca4g01690 660 Pfam Alpha amylase, catalytic domain 281 398 IPR006047 GO:0005975
Seca4g01690 660 CDD AmyAc_Glg_debranch 240 659 - -
Seca4g01690 660 Gene3D Glycosidases 237 659 - -
Seca4g01690 660 SUPERFAMILY E set domains 107 244 IPR014756 -
Seca4g01690 660 SUPERFAMILY (Trans)glycosidases 239 658 IPR017853 -
Seca4g01690 660 Gene3D Immunoglobulins 92 230 IPR013783 -
Seca4g01690 660 CDD E_set_GDE_Isoamylase_N 111 260 IPR044505 -
Seca4g01690 660 Pfam Carbohydrate-binding module 48 (Isoamylase N-terminal domain) 112 210 IPR004193 GO:0004553|GO:0005975
Seca4g01690 660 PANTHER GLYCOGEN DEBRANCHING ENZYME 92 657 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01690 Seca-Chr4 27464183 27510176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01690 6 657 Glycoside Hydrolase AT4G09020 73.313 0.0 988
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01690 K01214 - gmx:100807545 1180.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01690 4 27464183 27510176 Seca4g01690 4 27464183 27510176 ECH