Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01687 ATGGCATTCTCTAATTTGGTTTTAGGCTTATTTCTTCTAGCCATCAACATGGCCCTCCCAACCATGGCAACAGTGTACACTGTAGGAGATACTTCAGGTTGGGCAATTGGTGGTGATTACAGCACTTGGACTAGTGACAAGACCTTTGTAGTTGGAGATAGCCTTGTGTTCAACTATGGAGCTGGGCACACAGTGGATGAAGTTAAAGAAAGTGACTACAAATCATGCACAACAGGCAATTCAATTAGTACAGACAGTAGTGGAGCCACCTCCATTGCCCTTAAGACTGCTGGCACTCATTACTTCATATGTGCAGTTCCTGGACATTGCTCTGGTGGAATGAAACTTGCTGTTACTGTTAAGGCTGCTTCTTCTTCTGCAACACCATCATCTGGGAAAGGTTCACCTTCACCTTCTGCAGATAGCAGCACCACCAAAGGCACCCCTAGCAGCAGCACCACAACTACCACTACCACCACACCCACTACTAAATCAAATTCATCTTCAGCAAGTAGTCTCTCAACAATTGCTGCTATGTTGATTGTTTCTTGGATCTCTTACTATGTTTTGCGTCTGGTTTGA 582 0.4467 MAFSNLVLGLFLLAINMALPTMATVYTVGDTSGWAIGGDYSTWTSDKTFVVGDSLVFNYGAGHTVDEVKESDYKSCTTGNSISTDSSGATSIALKTAGTHYFICAVPGHCSGGMKLAVTVKAASSSATPSSGKGSPSPSADSSTTKGTPSSSTTTTTTTTPTTKSNSSSASSLSTIAAMLIVSWISYYVLRLV. 194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01687 193 ProSitePatterns Type-1 copper (blue) proteins signature. 98 114 IPR028871 -
Seca4g01687 193 MobiDBLite consensus disorder prediction 125 169 - -
Seca4g01687 193 Pfam Plastocyanin-like domain 37 114 IPR003245 GO:0009055
Seca4g01687 193 CDD Phytocyanin 24 120 - -
Seca4g01687 193 SUPERFAMILY Cupredoxins 22 120 IPR008972 -
Seca4g01687 193 Gene3D - 22 127 IPR008972 -
Seca4g01687 193 PANTHER BLUE COPPER PROTEIN 23 144 IPR039391 GO:0009055
Seca4g01687 193 ProSiteProfiles Phytocyanin domain profile. 24 122 IPR003245 GO:0009055
Seca4g01687 193 FunFam Blue copper 22 126 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01687 Seca-Chr4 27444696 27446746 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01687 7 126 Miscellaneous Gene Families AT1G22480 57.500 6.28e-39 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01687 - - gmx:100306522 219.935
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01687 4 27444696 27446746 Seca4g01687 4 27444696 27446746 ECH