Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01665 ATGGAAAACCAAAAGAATTTTCGTACGATGCCAGCTGATCATGCTATGAAATTGGAGTTAATCATTAAAAATTATGGTCTAATGGAAGCTGAAGAATATTTTATCAGTATACCTGACTCAGCTGCGAAGAAAGCTGCCTATCTCCCACTTCTGTGTGGCTATGTAAGAGATAGGGACACTAGTAAAGCTGAGACATTCATGGTGAAGCTCTATGAACTGGGGCTAATGGTGAGCCCTCACCCTTATAATGAAATGATGAAACTATATCTGGCCACATGTGAGTACAGGAAGGTACCCCTTGTTATCCAGCAAATGAAGCGAAATAAAGTACCCTGCAATGTTCTGTCCTACAACCTTTGGATGAATGCTTGTGGTGAGGGTGAAGGATATGGGGTTGCAGCAGTAGAGACAGTTTTCAGAATAATGCAAAAAGATGAGAATGTTGAAGTGGGATGGAGCAGTCTTGCTACTCTAGCCAATGTTTATATGAAAGCAGGACAATTTGACAAAGCCATTGTGGTTCTCAAAAATGCTGAAAAGAAACTATCTACCTGCAACCGTCTTGGTTACTTCTTCCTCATAACACTATATGCCTCTTTGAAGGAAAAGGAGGGAGTCTTGCGGTTGTGGGAAGCTAGTAAAAAAGTTGGTGGAAGAATCAGTTGTGCCAACTACATTTGCATACTAACATGCTTGGTGAAGCTTGGAGACTTGGTACAAGCCAAGAGAATCTTCATGGAATGGGAATCTAATTGTCGAAAGTATGATATCAGGGTCTCAAATGTTCTTTTGGGTGCATACGTGCGTAATGGATTAATGGACGAAGCTGAATCATTACATCTCCACACATTGCAAAAGGGTGGTTGTCCAAACTACAAGACATGGGAGATTCTCATTGAAGGATATATCAATAGGCAAAAAATGGACGAGGCTATTATTGCTATGAAGAGGGCTTTGGCTATGTTGAAAGATTGTCATTGGAGGCCGCCACACGGACTTGTATTAGCCATAGCAGAGCATTTGGAGAAACATGGGAATTTTGAATATGCAAATGAGTATATTATAGATATCCATAATTTAGGTCTTGCAAGCTTATCATTGTACAAAATATTACTCAGAATGCACCTTTCTGCTAACAAATCACCTTCCCATATTCTTAAAATGATGGATGAAGATAAAGTTGAGATGGATAATGAGACCCTTTCCATTCTTAAACCCTTCACTGGGATGAAGGGTTTGGAGGTGAAGCAGTAA 1254 0.4003 MENQKNFRTMPADHAMKLELIIKNYGLMEAEEYFISIPDSAAKKAAYLPLLCGYVRDRDTSKAETFMVKLYELGLMVSPHPYNEMMKLYLATCEYRKVPLVIQQMKRNKVPCNVLSYNLWMNACGEGEGYGVAAVETVFRIMQKDENVEVGWSSLATLANVYMKAGQFDKAIVVLKNAEKKLSTCNRLGYFFLITLYASLKEKEGVLRLWEASKKVGGRISCANYICILTCLVKLGDLVQAKRIFMEWESNCRKYDIRVSNVLLGAYVRNGLMDEAESLHLHTLQKGGCPNYKTWEILIEGYINRQKMDEAIIAMKRALAMLKDCHWRPPHGLVLAIAEHLEKHGNFEYANEYIIDIHNLGLASLSLYKILLRMHLSANKSPSHILKMMDEDKVEMDNETLSILKPFTGMKGLEVKQ. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01665 417 Gene3D Tetratricopeptide repeat domain 155 340 IPR011990 GO:0005515
Seca4g01665 417 SUPERFAMILY TPR-like 155 321 IPR011990 GO:0005515
Seca4g01665 417 Pfam PPR repeat 261 280 IPR002885 -
Seca4g01665 417 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Seca4g01665 417 PANTHER OS12G0527900 PROTEIN 1 396 - -
Seca4g01665 417 Gene3D Tetratricopeptide repeat domain 3 130 IPR011990 GO:0005515
Seca4g01665 417 Pfam Pentatricopeptide repeat domain 74 126 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01665 Seca-Chr4 27073390 27077471 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01665 5 329 EF-hand Containing Proteins AT1G02150 33.231 1.93e-66 219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01665 - - gmx:100813805 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01665 4 27073390 27077471 Seca4g01665 4 27073390 27077471 ECH