Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01634 ATGGAGTACAACGAGAAAACCGCAATGATACGCGACATCGGGTTACAAATCGTTCTGATCCTTATTTTCATCTTCACCTTCCTGGGCTTACATGGCATTCCCCAGAGGCTATTTGCCAAGCTCCGCATCAGAAACCGAGCCAGCATCAAAGCGAAGCGTCACTTCGTGCAAGGCGCTCAGCTCCTCGCTCAAGCCAGATCCTCGAAGAACCGATCCAGATCCAGCTCCAACTCGCTGGCTAAGCAAGCTGAAGCCGAAGCTGAGAAAGCCATCGCACTTGATCCTAAGGACGCAGCTTCTTATCTTCTCAAAGCCATGGCTCTCGAAATCCAAGGTTTTCGAACTTCCGCTCTCGAATCTCTCGAAGCGGCTTTGTCTCCGCTCGCTGCTGGCTCACTCGCTGATGGTGAGAGAGGCGACGCGCTTCTTAAGAGGGCCGAGTTGAAAATCGCTACGAGTCAGCGCGGTAAGGTTGACTCGGCGCTGGCCGATTTGACCGAGTCGGTGAAGCTGAGTCCCAAAAACCCCAAAGCTTGGTGTCTGTTAGGGGAATGCTATGAGGGAAACAAGATGGAAGAGGAAGCAAAGAAGGCTTACAAGGAGGCTCTTGAGTTGGAGCCAAACTTGTCTGTGGCTCAAGAAGCACTCAGCAAGTTGGGTTCGTCATAG 669 0.5232 MEYNEKTAMIRDIGLQIVLILIFIFTFLGLHGIPQRLFAKLRIRNRASIKAKRHFVQGAQLLAQARSSKNRSRSSSNSLAKQAEAEAEKAIALDPKDAASYLLKAMALEIQGFRTSALESLEAALSPLAAGSLADGERGDALLKRAELKIATSQRGKVDSALADLTESVKLSPKNPKAWCLLGECYEGNKMEEEAKKAYKEALELEPNLSVAQEALSKLGSS. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01634 222 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 6 81 216 - -
Seca4g01634 222 Gene3D Tetratricopeptide repeat domain 134 221 IPR011990 GO:0005515
Seca4g01634 222 Gene3D Tetratricopeptide repeat domain 43 133 IPR011990 GO:0005515
Seca4g01634 222 SUPERFAMILY TPR-like 82 216 IPR011990 GO:0005515
Seca4g01634 222 SMART tpr_5 139 175 IPR019734 GO:0005515
Seca4g01634 222 SMART tpr_5 176 209 IPR019734 GO:0005515
Seca4g01634 222 Pfam Tetratricopeptide repeat 176 208 IPR001440 GO:0005515
Seca4g01634 222 ProSiteProfiles TPR repeat profile. 176 209 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01634 Seca-Chr4 26492867 26493535 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01634 - - gmx:100783725 271.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01634 4 26492867 26493535 Seca4g01634 4 26492867 26493535 ECH