Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01633 ATGCACGGTCGGCCTCGCAAAGCTTCTAAACAAGAAGATGCAGCAGCCTTATCAGCCAAAGCTCAAAAGCTTCGTACACTTCAATCTGAGTTTCTCGCTAATCACCACAATAGCATATACAGCAAGGAAGCGCTAGAGGTGAGCGCGAAGCTTCTGGAAGTTAATCCAGAATGTTACACAGCTTGGAATTACAGAAAGCTCGCCGTTCAACACTTCCTCTCTCACTCCGATTCCGATCCTAACTCTATCACGTCTCTCTTTGATGAGGAGCTCAAAGTGGTGGAGAGTGCGTTGAGGAAGAATTTCAAGTCTTACGGTGCGTGGCATCATAGAAAATGGATACTCAGCAAGGGGCATTCATCCATAGATAACGAATTGCGCCTTCTGAATGGTTTTCAGAAGGCCGATCCTCGAAATTTTCACGCATGGAATTACCGAAGGTTTGTTGCTGCACTGATGAAAAGATCAGATGAGGATGAGTTGAATTACACAGAGGAAGTGATAGGGGCCAATTTTAGTAATTACTCTGCTTGGCACAATCGGAGTGTGCTTTTGTCCAATTTACTGAAAAGAAAGGCCGGAGGATTTTTCCCTAAAGAAAAAGTTTTGGGAGAGGAGTATGAGCATGTGCACAATGCTATTTTTACTGATCCAGATGATCAGAGTGGCTGGTTTTATCATCTTTGGCTTATTGATCAAACAGTGAAAACTGATGCTCCTCTACTTGTTTCATCTTGGCCTTCTCATGGATCCAATATAACCGTAAATGGAGACAACTGCCTTCAAGGTTGTGGTTTGTCTCTGTTGAATAGTACACTATCAGACTCTGGAACACTTCCAGTCATTCTTTATTTCAATCAAGCTGTTGAAGGCATAAACTCATCCACTGTGGTTGTTAAATCTGAACTGTTAAAGGAGGATCTTGTTTGGAAACCACTTTCAACAAACAACTCAAATACTGCTCAAGCTTGGGTTTTGTATCTAAAGCTTGGAAATATGGAGCTCCAACCATCAAAGACTTACTCCATAGAGATTAGCATTGGACATTGTAGTGGTATTGTATCCTCCGGTGGGTATCATTATGGTAATCCTTCCCAGATTGCCTTTAAAGTGTGTATACAGACTGCTTATACAGAACCTGCTGAAGAACAGTGTGGAACAATGACTTCATGGAAGGATGAAGATTTCCAAAAACTTGATCATTTTGAGGAATCAGATTCCATTGTTTCTGCTGATCAACTAATTACTGAGAATCACCATATTCCAACAACTTTGATTTGGTCCGTGGAGATAATTGCCGAAGAAATAAATAAATTTCGGGAGTTATTGTCAGAGTATGACTGTAAAATTGGAAAGCTTACACTTGCAAGACTTCTGACTGCTCTTGATTTGTTATCATCTCAACATGATAAAAGAAATTTTAAAACTGAAGAAGTTCTTCAACTTTACTCTGATCTGATGAAGTTGGATCCAACACATTCGTTATACTACAAGGATGAGCGTAGCCTGATATTACTTAAACAGATAACTTCAAGTAGGGAGTATTTACGACCATACTGCCACTACTATAAAGATGCAACAGAAGCAATTACTGGTTATGGCTGTCTACGATTACAGAATCTATCATTATCACGGATGGGGTCCTTTGAAAATTTATTGTGGGTGCAAATGCTTGACCTTAGCCATAATGAACTTCGATCAATTGAAGGGTTGGAGGCCATGCAACTTCTATCTCGCTTGAATCTGAGTCATAATAAATTTAGTAGTTTTACTGCTCTGGGGCCTCTCAGATTGCTGAAGTCACTTAAAGTCTTGAATATCTCATACAATGAGTTAGGCTCTCACTCGATTGACACCACAAGATACCTATGCTCTTCTCCGTTAGCTCATACTGAAGAATTTGCCTGGGACCGTTTTGAAATCCTTACTGGCAGCATTAGTGCCACAAATTTTTGGGAAGCTTTCTTGATATTTGAAAGCTTGAACTTGACAGAGTTAAACATAACTGGGAATGCAGTTGCTGATGAGAACTTCAACTCATTCATTGTCAAAGTTTTGCCTACACTTAAGTTTCTAGATGGTGGAGAATTATCTTGA 2097 0.4001 MHGRPRKASKQEDAAALSAKAQKLRTLQSEFLANHHNSIYSKEALEVSAKLLEVNPECYTAWNYRKLAVQHFLSHSDSDPNSITSLFDEELKVVESALRKNFKSYGAWHHRKWILSKGHSSIDNELRLLNGFQKADPRNFHAWNYRRFVAALMKRSDEDELNYTEEVIGANFSNYSAWHNRSVLLSNLLKRKAGGFFPKEKVLGEEYEHVHNAIFTDPDDQSGWFYHLWLIDQTVKTDAPLLVSSWPSHGSNITVNGDNCLQGCGLSLLNSTLSDSGTLPVILYFNQAVEGINSSTVVVKSELLKEDLVWKPLSTNNSNTAQAWVLYLKLGNMELQPSKTYSIEISIGHCSGIVSSGGYHYGNPSQIAFKVCIQTAYTEPAEEQCGTMTSWKDEDFQKLDHFEESDSIVSADQLITENHHIPTTLIWSVEIIAEEINKFRELLSEYDCKIGKLTLARLLTALDLLSSQHDKRNFKTEEVLQLYSDLMKLDPTHSLYYKDERSLILLKQITSSREYLRPYCHYYKDATEAITGYGCLRLQNLSLSRMGSFENLLWVQMLDLSHNELRSIEGLEAMQLLSRLNLSHNKFSSFTALGPLRLLKSLKVLNISYNELGSHSIDTTRYLCSSPLAHTEEFAWDRFEILTGSISATNFWEAFLIFESLNLTELNITGNAVADENFNSFIVKVLPTLKFLDGGELS. 699
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01633 698 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 156 190 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 86 120 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 Gene3D Ribonuclease Inhibitor 524 698 IPR032675 -
Seca4g01633 698 FunFam Geranylgeranyl transferase type-2 subunit alpha 1 246 - -
Seca4g01633 698 ProSiteProfiles Leucine-rich repeat profile. 554 575 IPR001611 GO:0005515
Seca4g01633 698 Gene3D Protein prenylyltransferase 1 247 - -
Seca4g01633 698 SUPERFAMILY Protein prenylyltransferase 16 501 - -
Seca4g01633 698 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 121 155 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 ProSiteProfiles Leucine-rich repeat profile. 576 597 IPR001611 GO:0005515
Seca4g01633 698 Pfam Protein prenyltransferase alpha subunit repeat 205 233 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 Pfam Protein prenyltransferase alpha subunit repeat 158 188 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 Pfam Protein prenyltransferase alpha subunit repeat 88 117 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 Pfam Protein prenyltransferase alpha subunit repeat 123 150 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 Pfam Protein prenyltransferase alpha subunit repeat 42 71 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 SUPERFAMILY L domain-like 532 613 - -
Seca4g01633 698 FunFam Rab geranylgeranyl transferase like protein 512 698 - -
Seca4g01633 698 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 40 74 IPR002088 GO:0008318|GO:0018342
Seca4g01633 698 PANTHER PROTEIN FARNESYLTRANSFERASE ALPHA SUBUNIT/RAB GERANYLGERANYL TRANSFERASE ALPHA SUBUNIT 2 508 - -
Seca4g01633 698 PRINTS Leucine-rich repeat signature 599 612 - -
Seca4g01633 698 PRINTS Leucine-rich repeat signature 555 568 - -
Seca4g01633 698 ProSiteProfiles Protein prenyltransferases alpha subunit repeat profile. 202 236 IPR002088 GO:0008318|GO:0018342
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01633 Seca-Chr4 26487079 26491902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01633 K14050 - gmx:100807900 1157.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01633 4 26487079 26491902 Seca4g01633 4 26487079 26491902 ECH