LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g01632	ATGCCCTCTAACGAAGACTTCCAAGGTGTTTCAAATTGCTATGTGTTCAAGAGCCGACTGCAGGAGTATGCTCAGAAGGCAGGACTCCCCACTCCTGTCTATGAAACTATCAAGGAAGGTCCATCCCATGAACCTTCTTTCAAGTCAACAGTGATAGTGAATGATGTTCGGTATGATTCTTTGCCTGGATTTTTCAACCGTAAGGCAGCAGAGCAGTCAGCTGCGGAAGTTGCTTTGGTGGAGTTGGCCAAATCTGATGAAGTTAATCGATCCATCACTCAGCCTGTTCATGAAACTGGATTATGCAAGAATTTACTTCAGGAATATGCACAGAAGATGAATTATGCAATGCCCATGTATCATTGCAAAAAGGATGAAACACCAGGTCGAACACCAGTATTTTCATGTACAGTTGACATTGGGGGAATTCTCTATATTGGGGGAGGAGCTAAAACAAAGAAGGAAGCAGAGATAAAAGCAGCTAGAACTGCTTTATTAGCTATTCAGTCAAGTGCATCTCATGCTTCCCAAAACCAGTATGGCCATTCACAGTTGACAGTCATTCCATCCAAAAAAAGGGCAACAGAATCTGTTACGCAAGCTGATGAGGCTTCAAATGCCCCAAAGCCTAAGAAAGCACGGTTTAAAAGGAAATCTTCTAAGAGGAAACCCTCTAGAGATAAGATGGGTCATAATCGTGCTGAAAATGTGGGCGTTGGAACAAACATCAATCATGAGGTAGACTCACATGCAAGTTTTAATGCTGAATCCTGCATCCAGGAAATGAAATCTGAAGCATTCTCTTCAGAAGCCAAGAAGAATATTGAGAACGGAATATCTGAAGCCATGAAGAATATTGAGAACGGGATATCTGTTGCTTATCAGGAGAAAGAGACATTGGCCAGGGAGGATTCTTTTGCTCAGAATAGTCAAGGGACTTTTGAAAATGGGAAGTCAGCCGAATTGCATTCCAAAGAGAACAACAACATTGGGACTGTTGCTACAGAACCATCTTCTGTGAGTAATGGAGACATCCCAGAAATGAGCTTTGAGGTGAACAAACAGCAATATAATGGAGAAACGGTCTCTGACAAATAA	1098	0.4208	MPSNEDFQGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFKSTVIVNDVRYDSLPGFFNRKAAEQSAAEVALVELAKSDEVNRSITQPVHETGLCKNLLQEYAQKMNYAMPMYHCKKDETPGRTPVFSCTVDIGGILYIGGGAKTKKEAEIKAARTALLAIQSSASHASQNQYGHSQLTVIPSKKRATESVTQADEASNAPKPKKARFKRKSSKRKPSRDKMGHNRAENVGVGTNINHEVDSHASFNAESCIQEMKSEAFSSEAKKNIENGISEAMKNIENGISVAYQEKETLAREDSFAQNSQGTFENGKSAELHSKENNNIGTVATEPSSVSNGDIPEMSFEVNKQQYNGETVSDK.	366

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g01632	365	SMART	DRBM_3	16	83	IPR014720	-
	Seca4g01632	365	SMART	DRBM_3	102	169	IPR014720	-
	Seca4g01632	365	Pfam	Double-stranded RNA binding motif	103	166	IPR014720	-
	Seca4g01632	365	Pfam	Double-stranded RNA binding motif	17	79	IPR014720	-
	Seca4g01632	365	PANTHER	RIBONUCLEASE III	13	230	IPR011907	GO:0003723\|GO:0004525\|GO:0006364
	Seca4g01632	365	MobiDBLite	consensus disorder prediction	172	204	-	-
	Seca4g01632	365	SUPERFAMILY	dsRNA-binding domain-like	15	82	-	-
	Seca4g01632	365	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	101	170	IPR014720	-
	Seca4g01632	365	MobiDBLite	consensus disorder prediction	309	365	-	-
	Seca4g01632	365	FunFam	double-stranded RNA-binding protein 1	13	89	-	-
	Seca4g01632	365	Gene3D	-	16	97	-	-
	Seca4g01632	365	CDD	DSRM_AtDRB-like_rpt1	15	83	IPR044450	GO:0003725
	Seca4g01632	365	SUPERFAMILY	dsRNA-binding domain-like	103	170	-	-
	Seca4g01632	365	Gene3D	-	98	170	-	-
	Seca4g01632	365	MobiDBLite	consensus disorder prediction	211	227	-	-
	Seca4g01632	365	MobiDBLite	consensus disorder prediction	172	243	-	-
	Seca4g01632	365	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	15	84	IPR014720	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g01632	Seca-Chr4	26479500	26482578	Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g01632	-		-	gmx:100782651	518.079

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g01632	4	26479500	26482578	Seca4g01632	4	26479500	26482578	ECH