Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01620 ATGGAGTCCTTAGCTGCGTTTTCTTCAAGCTTCGCTTTAGCACCTCCACTCGCCGATTACTCCGTTTGCAGAAGTCGACGCGGTTGGGCATTTCCTCCTCGTAGGATCAACACTAGAATGGAGGCTCAGGCCAAGCCCAAGGAGGCTAAACTCTGGGGTGGAAGGTTCAAGGAGGGCGTCACTGACGCCGTTGAGCACTTCACCGAATCGATCTCTTTCGACAAAGAGCTATACAAGCACGACATTATGGGAAGCCGAGCACATGCTTCCATGCTCGCTCAACAGGGATTGATTACCGCGAGTGATAGGGATTCTATTATTCAAGGTTTGAATGAGATAGAGAGGCGCATTGAGAATGGTGAGTTTAATTGGAGAGCTGATAGAGAGGATGTGCACATGAACATTGAAGCCGCACTCACTGATATGATCGGTGAACCTGCAAAGAAACTCCACACTGCTCGAAGCCGAAACGATCAAGTTGTTACTGACTTACGCCTATGGTGTCGCGATGCCATTGATAGGATCATTGCAAGCATGAAACACCTTCAGGTCTCGCTGCTGACCCTGGCTTTGAAGAATGAGGGTCTCATTGTTCCTGGTTATACTCATTTGCAGCGCGCACAACCCATTTTACTCCAACATCACTTGCTCGCGTATGTTGAAGAGATTGACCGCGATGCTGGACGTTTGATAGATTGCAGAGCTAGGATGAATTTCTGCCCGTTAGGGGCTTGTGCTTTGGCTGGTACAGGCCTCCCGATTGATCGATTCATGACTTCAGATGCCTTAGGATTTACAGCTCCCTTGAGGAATAGTATGGATGCAGTTTCTGACCGAGATTTTATACTGGAGTTTTTGTCTGCTAATGCCATCACAGCAGTGCATCTTTCCCGGCTTGGTGAAGAATGGGTATTGTGGGCTTCAGAGGAATTTGGATTTATCACACCAAGCGACTCTGTTTCAACTGGAAGTAGTATAATGCCTCAGAAAAAGAATCCAGATCCAATGGAACTTGTTCGTGGGAAGTCTGCTAGAGTCATAGGAAATCTGGTTACTCTTCTGACATTGTGCAAAGGGCTTCCTCATGCCTACAACCGTGATTTGCAGGAAGACAAAGAACCAGTATTTGACAGCGTTAAGACTATTTTAGGGATGCTTGAGGTATCAGCAGAATTTGCACTGAACATTACTTTCAATCGGGGAAGAATACAAAAAGCTTTACCTGCTGGTTATCTTGATGCAACCACACTTGCTGATTATCTTGTTAAGAAGGTAAGTCACATTTAA 1287 0.4615 MESLAAFSSSFALAPPLADYSVCRSRRGWAFPPRRINTRMEAQAKPKEAKLWGGRFKEGVTDAVEHFTESISFDKELYKHDIMGSRAHASMLAQQGLITASDRDSIIQGLNEIERRIENGEFNWRADREDVHMNIEAALTDMIGEPAKKLHTARSRNDQVVTDLRLWCRDAIDRIIASMKHLQVSLLTLALKNEGLIVPGYTHLQRAQPILLQHHLLAYVEEIDRDAGRLIDCRARMNFCPLGACALAGTGLPIDRFMTSDALGFTAPLRNSMDAVSDRDFILEFLSANAITAVHLSRLGEEWVLWASEEFGFITPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGNLVTLLTLCKGLPHAYNRDLQEDKEPVFDSVKTILGMLEVSAEFALNITFNRGRIQKALPAGYLDATTLADYLVKKVSHI. 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01620 428 Hamap Argininosuccinate lyase [argH]. 50 428 IPR009049 GO:0004056|GO:0042450
Seca4g01620 428 SUPERFAMILY L-aspartase-like 51 424 IPR008948 GO:0003824
Seca4g01620 428 Gene3D - 70 277 IPR024083 -
Seca4g01620 428 ProSitePatterns Fumarate lyases signature. 323 332 IPR020557 GO:0003824
Seca4g01620 428 PANTHER ARGININOSUCCINATE LYASE 39 424 IPR009049 GO:0004056|GO:0042450
Seca4g01620 428 CDD Argininosuccinate_lyase 70 424 IPR009049 GO:0004056|GO:0042450
Seca4g01620 428 NCBIfam argininosuccinate lyase 51 424 IPR009049 GO:0004056|GO:0042450
Seca4g01620 428 PRINTS Argininosuccinate lyase family signature 241 257 - -
Seca4g01620 428 PRINTS Argininosuccinate lyase family signature 190 210 - -
Seca4g01620 428 PRINTS Argininosuccinate lyase family signature 323 339 - -
Seca4g01620 428 PRINTS Argininosuccinate lyase family signature 149 171 - -
Seca4g01620 428 PRINTS Argininosuccinate lyase family signature 279 303 - -
Seca4g01620 428 PRINTS Argininosuccinate lyase family signature 358 377 - -
Seca4g01620 428 PRINTS Fumarate lyase superfamily signature 195 213 IPR000362 -
Seca4g01620 428 PRINTS Fumarate lyase superfamily signature 150 168 IPR000362 -
Seca4g01620 428 PRINTS Fumarate lyase superfamily signature 323 339 IPR000362 -
Seca4g01620 428 PRINTS Fumarate lyase superfamily signature 279 306 IPR000362 -
Seca4g01620 428 FunFam Argininosuccinate lyase chloroplastic 277 421 - -
Seca4g01620 428 FunFam Argininosuccinate lyase 49 154 - -
Seca4g01620 428 Pfam Lyase 54 348 IPR022761 -
Seca4g01620 428 Gene3D Fumarase/aspartase (Central domain) 167 407 - -
Seca4g01620 428 Gene3D - 408 424 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01620 Seca-Chr4 26310378 26313785 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01620 K01755 - gmx:100796544 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01620 4 26310378 26313785 Seca4g01620 4 26310378 26313785 ECH