Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01599 ATGCGTGTCACCGGGGATCTAGGGTTTTCGAGCCTGGTCCTTGTGGTGGTTTGTGTGATCGTGCCGGTGATCGCCTTTGTAATTCGCCGTAAATGGCAGCTTGCGGTGGCTAGGAATGAGGAGATCAAGAGGCTCTTGATTTTGGCTGCCGAGGAAACTGCCAGGGCCGAGAGAGAGGCGTCCTATGTGTACGGCGCGGCGGTTTCCGCTACTCACAGCAATCAATGTGCTCTCTGCTATTTCCCCGCCACCGCGCGTTGCGCTCAGTGCAAATCCGTTCGATACTGTTCTTCTGAGTGCCAAACTGTTCATTGGCGTCAAGGTCACAAATTTGAATGCCGTCCTCTGAGCAAAACTCACCAGAGTGATGATGTAATAAATGACCTTTGCAAGAAGGTAGCGGAGCAAGACTACCCTGAAATCCATGACGAGAAGTCTGATAGTGGAGGCACAGAGTGTAAAACATTCTCTGAAAAATCCTCAATTTCTGATAACAGCAGTTCTCCTAATGTTTCATTTGGAAAGGATGATAATATTAAAGTTGAGTCCCTTGCAGAGGGAAATGTAACAGATTCTAATTCTGACTTATCCAGTAACTCATTTTCTGGATTCTCAGCTTCCACAAGTTCTAGTGATTCATCTGATGATTCCTCTGTCTGTGAGAGTATCATCTCAAGTGAGCATGACAGATCAGAGGGACATAATTTTGTTATTCCCACCCTTGATATTCCTGATAAAACTTCAAGTGATAATAACATGGGTGTAGCGGTGTCTTCACCAAAGTTTGCAAGTCTGGTTGATTCAGTAGATGGTTTTTCTACAATGCATAAATTAAATCAAACTACACCTGATTTTAGTAAAGAAGAGAGAAAGATTGCATTCAATGGTACTTCAGGTTCAAGTATGCTGAAGGGGGCGAAAATTGAGCCTTCTACAGTGTATTCTGGTTTCTGGGATGAAACTCTTGATTCGAGAGAGATTAAAAATGATGCTAATGTTAACAATTGTCCATCCCATTCCGATGAATCCACCTGTGAAAACATTGATTCTGGTTCTCCATTTCACTTTTCGTTCAGTACCATGGCTCCTTTGCATGCACGAGATTCCAATGCAAAGGATTCAGTGTCTGATGAATCTTTTCGAAACTCTGTTGAGAACAATATGCCACGCCCAGGATTGGCATCACCAGAGAATGACAGCATGAATTCTTCAAAGGTGAGGAATTACTCGTTCGACAACAGCAATGATTCCAATGTTATGAGCCATAGTACTCCCAGTGGTTCTGTATCTGGTCAGTTGGGGTCTAAAGACGGCTCTGGGTCACCTTTATCTTCTCTCTCCCCTCAATCCTCAAGTATTGGCAAAAATTCAAGCTGTGCAGATGCTTTGAGCATCCATAACTTGCAATCAGCTGTCTCTATGGTGTCAAATCATGTTGTGGAAAACCATGGTGGCACATTGAAATCCACTGATATTAGATGCCTGACACGCAAACTTCCTGATTCTAATTTAATTTCTAGAACTGAAAGGCGTTCACATTCCAGTACAAAACATGGGAATAATGACATTGAATCTGACACTGTCACTTACTCTCACGTTCCTAGCTCTTCTTCAAATTCAAAGAGTGGCTTGAAAACATCTGTTTTGAAAGTTGTAGATCAGTTTAGAGGATCGAATTTGTCAAAGCACTTTCCACTAGCTGTTGGTACTGATGGAAGATACAATGACAAGTTGCTACAGGGTCTTTTTCCATATGAATTATTTGTCAAGCTTTATAACTTCAACAAGATGGAGTTGCGCCCATTTGGTCTTATGAATTGTGGAAACAGTTGTTATGCTAATGCTGTTCTTCAGTGTTTAGCATTTACACCTCCCCTGACTTCTTATTTGCTTCAAGGACTACATTCTAAATCATGCACAAATAAAAAATGGTGTTTCACCTGTGAATTTGAAAGCTTGATTTTGAAGTCAAAGGACACAAAATCTTCGCTGTCTCCTATGGGCATACTCTCTCATCTACAGAGTATTGGGAGTCAGCTTGGTAATGGCAGAGAAGAAGATGCACATGAATTTCTGAGGCTTGCTATTGACACAATGCAATCTGTTTGCCTTATGGAAGCTGGGGTTAATGCATCGGCTTCATCGGAAGAGGACACCACTTTAATGGGTCTAACATTTGGAGGCTACCTTCGGTCAAAGATACAATGCATGAAATGTGGTGGGAAGTCTGAGCGTCAGGAAAGGATGATGGATCTGACTGTTGAGATAGAAGGGGAGATAACCACCCTGGCGGAGGCCCTTCGACGGTTTACAAGCACCGAAACTTTGGATGGAGAAAACAAGTACCACTGTGTCAGATGTAATTCTTATGAGAAGGCCAAGAAGAAGCTGACAGTTTCAGAGGCACCCAATGTTCTTACAGTTGCATTAAAGAGATTTCAGTCTGGAAAATTTGGGAAGCTCAACAAGCCTATTCAATTTCCTGAAATACTTGACTTGGCACCTTTCATGAGTGGAACTAGTGATAAATCACCCATATACAGATTATATGGGGTAGTTGTTCACTTGGATATTATGAACGCTTCTTTTTCAGGTCACTATGTGTGCTATGTGAAAAATATCCAAAACAAGTGGTTCAAGGTTGATGACAGTGTGGTGACAGCTGTTGAGTTGGAGAGAGTCTTGACAAAGGGAGCATATATGCTTTTTTATGCAAGGTGTTCGCCAAGGGCCCCAAGATTAATCAGGAACAGGATACTATCCCCAGATTCAAAAAGTAAAGTCAATGGAAAGACTCTTGCAACAAAAGCAAGATACTCTTCTGGTGCTGCTGAAAATATCAGTAGTTCAATTTCTCCAAATGGCTCACCCACCTTAGATTCTTTCTATTCAAGGTTTCACCACCTGAAGAGGATTTTAGAAGAAGACTCATCAAGTGATAATTCATCCCTTTTCAGCAACAATTCTGATGAAGGTTCTTGCAGTACTGATAGTGCCCGTGATTCAACCAGCACAGATGACTTCTCCGATTATATTTTTGGTGATTCAGGGCAAGGGTGGAGTAACATGTGGAGGAATTCCGATTCTGACACATCTTCGACGTCCTCATCTCCCTTGAACACTAGACATTCGCCCCTATCTGATATGGACCGGTACGATTCAGTTTCTCCAGATGCAAGTGCGGAGATAGACGGTCCTTTATACAGGGACAGAGTGGTGGATGTTGAAAGGAGGAGCGTAGGTGTTTCTCATATGCATTCTGACACTTCACAGCATAGAAAGTTAGATAGTGATAGGATTAGCGGCAAGAATAGTAGTAGGGAGACTGACTCGTTTCTGAAACTAGGATCTAACCATTTTAATAATATAAACTCTGGTGTATCATATAGAAAGTCAAGGACAAGAACGGATTGA 3414 0.4209 MRVTGDLGFSSLVLVVVCVIVPVIAFVIRRKWQLAVARNEEIKRLLILAAEETARAEREASYVYGAAVSATHSNQCALCYFPATARCAQCKSVRYCSSECQTVHWRQGHKFECRPLSKTHQSDDVINDLCKKVAEQDYPEIHDEKSDSGGTECKTFSEKSSISDNSSSPNVSFGKDDNIKVESLAEGNVTDSNSDLSSNSFSGFSASTSSSDSSDDSSVCESIISSEHDRSEGHNFVIPTLDIPDKTSSDNNMGVAVSSPKFASLVDSVDGFSTMHKLNQTTPDFSKEERKIAFNGTSGSSMLKGAKIEPSTVYSGFWDETLDSREIKNDANVNNCPSHSDESTCENIDSGSPFHFSFSTMAPLHARDSNAKDSVSDESFRNSVENNMPRPGLASPENDSMNSSKVRNYSFDNSNDSNVMSHSTPSGSVSGQLGSKDGSGSPLSSLSPQSSSIGKNSSCADALSIHNLQSAVSMVSNHVVENHGGTLKSTDIRCLTRKLPDSNLISRTERRSHSSTKHGNNDIESDTVTYSHVPSSSSNSKSGLKTSVLKVVDQFRGSNLSKHFPLAVGTDGRYNDKLLQGLFPYELFVKLYNFNKMELRPFGLMNCGNSCYANAVLQCLAFTPPLTSYLLQGLHSKSCTNKKWCFTCEFESLILKSKDTKSSLSPMGILSHLQSIGSQLGNGREEDAHEFLRLAIDTMQSVCLMEAGVNASASSEEDTTLMGLTFGGYLRSKIQCMKCGGKSERQERMMDLTVEIEGEITTLAEALRRFTSTETLDGENKYHCVRCNSYEKAKKKLTVSEAPNVLTVALKRFQSGKFGKLNKPIQFPEILDLAPFMSGTSDKSPIYRLYGVVVHLDIMNASFSGHYVCYVKNIQNKWFKVDDSVVTAVELERVLTKGAYMLFYARCSPRAPRLIRNRILSPDSKSKVNGKTLATKARYSSGAAENISSSISPNGSPTLDSFYSRFHHLKRILEEDSSSDNSSLFSNNSDEGSCSTDSARDSTSTDDFSDYIFGDSGQGWSNMWRNSDSDTSSTSSSPLNTRHSPLSDMDRYDSVSPDASAEIDGPLYRDRVVDVERRSVGVSHMHSDTSQHRKLDSDRISGKNSSRETDSFLKLGSNHFNNINSGVSYRKSRTRTD. 1138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01599 1137 MobiDBLite consensus disorder prediction 396 457 - -
Seca4g01599 1137 SUPERFAMILY Cysteine proteinases 599 909 IPR038765 -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 367 457 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 978 1007 - -
Seca4g01599 1137 Gene3D Cysteine proteinases 594 916 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 1080 1111 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 503 520 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 141 175 - -
Seca4g01599 1137 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 326 910 - -
Seca4g01599 1137 Coils Coil 39 59 - -
Seca4g01599 1137 ProSiteProfiles Zinc finger MYND-type profile. 76 113 IPR002893 -
Seca4g01599 1137 FunFam Ubiquitin carboxyl-terminal hydrolase 15 67 117 - -
Seca4g01599 1137 FunFam Ubiquitin carboxyl-terminal hydrolase 15 596 915 - -
Seca4g01599 1137 Gene3D - 64 120 - -
Seca4g01599 1137 SUPERFAMILY HIT/MYND zinc finger-like 71 118 - -
Seca4g01599 1137 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 603 618 IPR018200 GO:0004843|GO:0006511
Seca4g01599 1137 MobiDBLite consensus disorder prediction 153 174 - -
Seca4g01599 1137 Pfam Ubiquitin carboxyl-terminal hydrolase 602 904 IPR001394 GO:0004843|GO:0016579
Seca4g01599 1137 Pfam MYND finger 76 113 IPR002893 -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 1023 1063 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 503 542 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 1080 1105 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 1023 1044 - -
Seca4g01599 1137 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 602 907 IPR028889 -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 189 221 - -
Seca4g01599 1137 MobiDBLite consensus disorder prediction 521 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01599 Seca-Chr4 25951853 25959148 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01599 582 911 Miscellaneous Gene Families AT4G31670 51.964 3.46e-121 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01599 K11855 - gmx:100793079 1467.98
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01599 4 25951853 25959148 Seca4g01599 4 25951853 25959148 ECH