Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01569 ATGGGACTCAACCACGCCGAAGACGACCACCGATCTTCCTCCTCCACAAAAACCCGAAACTGCATCGGCTCGGAGCTCCAATCTGCACAACCTGACCGTGTCCTAGAGAATGTCCTCGAAAACGTTCTCCACTTCCTCACCTCACGCCGCGACCGGAACGCCGCCTCATTGGTCTGCAAGTCATGGTGGCGCGCCGAGGCCCAAACCCGATCCGACCTCTTCATCGGCAACTGCTACGCTGTCTCCCCTCACCGCGCCACCGCCCGGTTCAGCCGCCTCCGGTCCGTCGCCATCAAGGGCAAGCCGCGGTTCGCGGACTTCGATCTGATGCCCCTAAACTGGGGGGCCCACTTCACCCCTTGGGCTAACGCCTTCGCCAAGGCCTACCCTTGGCTCGAGAAGGTTCACCTTAAACGCATGTCCATCACTGATCATGATCTCTCGCTTCTCGCTGATTCCTTCCCCAATTTCAAGGAACTCGTCCTTGTTTGCTGTGAAAGCTTTGGCACCTCTGGTCTTGCTGCCGTTGCTAGCAAGTGCAGGCCTTTTTGTTTGGGTGTGTGTTTTATTGCCAGGTTGCTTAGAGTGCTTGATCTTGTGGAATCTGTTGTTGAGGTTGCTGATGATGATGAAGTGGATTGGATATCATGTTTTCCTGAGAGTCAAACTCATTTGGAATCTCTTGTTTTTGATTGTGTTGAGTGCGCTATTAATTTTGAGGCCTTGGAGAGGTTGGTGGCTAGGTCTCCTTGTTTGAAGAGGCTTAGGTTGAATCGATATGTTCCAATGTCTCAGTTATACCGTTTAATGCATCGAGCACCACATCTCACGCATCTTGGAACGGGTTCCTTTGGTCTATCAGAGAGTGTGGCTGTTGGGGATCAAGAACCAGATTATGCATCTGCATTTGGGGCTTGCAAATCTTTGGTTTGTTTATCTGGATTCAGGGAGATTTGGGCAGATTACCTACCTGCTATCCATCCAGTCTGTGCTAATCTCACATCTTTGAATTTCAGCTATGCTGATATTAATGCTACTCAACTCAAATCGGTCATATGCCATTGTCATAAACTCCAGACATTTTGGGGGCTTGATTCAATTGGTGATGAAGGCCTTGAAGCAGTGGCTGCAACTTGCAAAGATTTGCGTGAGCTTCGGGTTTTCCCTGTTAATACAAGGGAGGAGACAAATGGTCCAGTTTCTGAGGTAGGATTTGTAGCGATTTCTCAAGGTTGTAGGAAATTGCAATCAATTTTGTTTTTCTGCCAAAGGATGACAAATGCAGCTGTGATAGCTATGTCAAAGAACTGCCCGGATCTTGTGGTGTTTCGCCTATGTATAATTGGGCGATATCGACCGGATCCTGAGACTCAAAAACCCATGGATGAAGGTTTTGGTGCTATTGTTAAGAACTGCAAGAAGCTCACTCGACTTGCTGTGTCTGGTTTACTGACTGATCAAGCTTTTCGTTATATTGGGATGTATGGGAAGTTGGTTAGGACACTGTCAGTTGCCTTTGCTGGAGACACAGACATGGGGCTCAAGTATGTGCTAGAAGGATGCCCTAATCTGCAAAAGCTTGAAATCAGGGATAGTCCATTTGGGGATGCAGCTTTGCGTTCTGGTTTGCATCATTTTTACAACATGAGATTTATTTGGATGTCGTCATGTAAATTGACACTCCAAGCTTGCCAAGAAGTTGCACGAACTTTGCCTCATATGGTGTTGGAAGTCATCAACAGTGAAGAGGGCAAAGTTGATGATATGGAGATACTGTACATGTATCGCTCTCTTGACGGACCAAGGGATGATGCTCCAAAAGTTGTTACCATCCTTCATTAG 1842 0.4767 MGLNHAEDDHRSSSSTKTRNCIGSELQSAQPDRVLENVLENVLHFLTSRRDRNAASLVCKSWWRAEAQTRSDLFIGNCYAVSPHRATARFSRLRSVAIKGKPRFADFDLMPLNWGAHFTPWANAFAKAYPWLEKVHLKRMSITDHDLSLLADSFPNFKELVLVCCESFGTSGLAAVASKCRPFCLGVCFIARLLRVLDLVESVVEVADDDEVDWISCFPESQTHLESLVFDCVECAINFEALERLVARSPCLKRLRLNRYVPMSQLYRLMHRAPHLTHLGTGSFGLSESVAVGDQEPDYASAFGACKSLVCLSGFREIWADYLPAIHPVCANLTSLNFSYADINATQLKSVICHCHKLQTFWGLDSIGDEGLEAVAATCKDLRELRVFPVNTREETNGPVSEVGFVAISQGCRKLQSILFFCQRMTNAAVIAMSKNCPDLVVFRLCIIGRYRPDPETQKPMDEGFGAIVKNCKKLTRLAVSGLLTDQAFRYIGMYGKLVRTLSVAFAGDTDMGLKYVLEGCPNLQKLEIRDSPFGDAALRSGLHHFYNMRFIWMSSCKLTLQACQEVARTLPHMVLEVINSEEGKVDDMEILYMYRSLDGPRDDAPKVVTILH. 614
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01569 613 MobiDBLite consensus disorder prediction 1 21 - -
Seca4g01569 613 FunFam Transport inhibitor response 1 71 612 - -
Seca4g01569 613 Gene3D Ribonuclease Inhibitor 72 612 IPR032675 -
Seca4g01569 613 Pfam F-box 32 71 IPR041567 -
Seca4g01569 613 Gene3D - 24 70 - -
Seca4g01569 613 MobiDBLite consensus disorder prediction 1 15 - -
Seca4g01569 613 Pfam Transport inhibitor response 1 protein domain 92 137 IPR041101 -
Seca4g01569 613 SUPERFAMILY RNI-like 58 575 - -
Seca4g01569 613 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 140 574 - -
Seca4g01569 613 SMART LRR_CC_2 129 153 IPR006553 -
Seca4g01569 613 SMART LRR_CC_2 472 495 IPR006553 -
Seca4g01569 613 SMART LRR_CC_2 412 436 IPR006553 -
Seca4g01569 613 SMART LRR_CC_2 521 545 IPR006553 -
Seca4g01569 613 SMART LRR_CC_2 154 179 IPR006553 -
Seca4g01569 613 SMART LRR_CC_2 355 378 IPR006553 -
Seca4g01569 613 FunFam Transport inhibitor response 1-like protein 25 70 - -
Seca4g01569 613 CDD F-box_AtTIR1-like 32 70 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01569 Seca-Chr4 25495356 25498210 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01569 - - aprc:113865934 986.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01569 4 25495356 25498210 Seca4g01569 4 25495356 25498210 ECH