Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01545 ATGGGGGCAGAGCCACAAATTTCCCGAAGCTTAATCAATAGAATCTACGCTCCATTGGCTAATGAAATTCATTTTGCAGCGCCTATCCCCTCCTTGCGAACAAATGAACTCGAACTCGTGCGAGGTGTTTTGCGAATACTGCAAGGGTTTTCTGGTTCCCTCTTCTCTTGGGATCACAGTGGAAGTAGTTTTCGTGCCAAGAGCGGAGTGTACGTTACTCATCTGTCACTGAAGAGTCTCCATTCCCTCCTCAATCAATTTATCCACGCGGCAACGTGTCTCCAACTGGTAGAGATTACACTCAATAAGGTTGAAAATGCAGTGGCAAAACCTCCTCCCACTCTGAAGGCATTTGCGTCCTCTGCTTCAGCGTGGCTTAAGCGGTTACGGAATATTGCCTTGAAGGAGGAAATGTCCACGACCAATGCAGATGGTTTAACCACTCCAACCTTGTTAGGATTGGCTAATTCTTTATCAAGTCTTTGCTCAGGTGCTGAGTTCCTATTGCGAATTGTCCATGAGGCTATCCCGGCAGTATATTTTGAGTTTGGTGCATCTGTACCGGCAGCAGAACTGGCTGTTCATGTACTTGACTATCTTCATAAGAAGCTTGATGAAGTGTGTCTTGTACAAGGTGGTGAGGAGGAAGCTTATCAGATGGTGCTTTATATGTATCTGGGAAGCTTATTGCCATACATTGAGGGTCTTGATTCCTGGCTTTTTGAAGGAATACTTGATGATCCTTCTGATGAGATGTTCTTTTTTGCTAATAAAGAAGTCTCAGTTGATGAGGCTGAGTTCTGGGAGAAGAGTTATTTATTAAGAATTCTACAACATAGTAAGTTCGATTCTGAGTACTCTTCCACAAATTATGTTGGTGATTCTGTGCCAGCATCAAATGACAAGAAAGAAATGGGCAGGAGGGAATCCATCTCTTTGTCTAGTACGAATAAAGGAAAAGAGCAGAGCACTAGAGACCGTCCAGCTTGTCCTTTTTTCATTAAGGATTTAGCTAAGTCAATTGTTTCTGCTGGAAAATCTTTGCAGCTGATGCGTCATGTCTCTAATTCCTTAGCAGTATGTAGCAAAGGAAGTAACTGTGAGATTGGAAGTACCAAATATTTAAACCACGGTTTGTATCCTTCTCAGAGAATGGCTGGGCTAACACTGTCAGAAGTTTTTTCTGTATCACTAGCTGGACTTATTGGACATGGTGACCACGTTTGTAAATACTTTTGGCAAGATGACTTGTGTGAATCTGTATCTGTTTCTTCCTTTGTATCTAATGTAAATGTAAGTGAGGAAAAAACAGAGAATGACAATAATGAAAATTTAACTGCTCCACCATACTCAGAGAAGATTTGGTATAAGTTCTTGATTGATGCATTATCTCAGAAAAGGTCAACTGATTTGAAGCTAAAATGTGAAGACATAAATAACGACGCAAGAGACCTGAGAGGGGCTAGAGTTGTTGAAGATGAATTGCTTCTCCTTAGATCCTGCTTAGAAAATCCAGTTATTACTGTGTGTCGAACAAATCTTGGAAAGAATGGGGATGCCTTGAAAACATTGAATTTATCTCGAAAGTTCTGCTTGCCTTCTTTGAACGATGAGGGTTTAAGAAAGTCTATATTTGATGGAGAAAGTACATCATTTTCTCGTAAAGAAGGAACAAACTATAGTTTTGGTTTTCAGTTTGGTGAATCTGAATACATTCGCTCACAGGAGGAGAGAAAGCTGTTAGAAATGTTATTTCCTTTTCCCACCATTTTGCCTTCATTTCAGGATGATCTCCCTGTGTCAGAGCTCTTGCCTTTCCAGAGAAACAGTACTCTTCCTTCAAGAGTTCTTCGCTGGATGCAAAATGTTGACTTAAGAACTACTCCACTTCCTCTTGTTATTATGCAGTACTGTCTAACTGTCTACATTCAGAAACAGGTGGATTATATTGGAGTGAACATGTTGTTAAAGTTGATGAACGAATGGAGGTTGATGGATGAGCTTGCAGTGTTGCGTGCTATATACTTGCTAGGTTCAGGTGATTTGCTACAACACTTTTTGACTGTAATTTTCAATAAGTTGGATAAGGGTGAAACATGGGATGATGATTTTGAACTAAACACAATATTACAGGAATCAATCCGAAACTCTGCTGATTGTATGCTCTTAAGTGCTCCAGATTCATTGGTAGTGTCATTAGTAAAACATCTTGGTGACGGTGATGAGGAAGGTAGCACAGCTGGTACTGTTTTGAGTACTCCTCATAAAAGTCATGTCAATAGCTTTGGAATTAATGGCCTTGATATGCTCAAATTCACATATAAGGTACCTTGGCCTCTTGAACTAATTGCAAATGCAGAGGCAATTAAGAAGTACAACCAGGTGATGCGATTCTTGCTAAAGGTCAAGCGTGCAAAATTTGTATTAGATAAAGTGCGAAGATGGATGTGGAAGGTGCTTTTGCATATTACTACCCATTTCTCTTCTGTGGAGCATGTGCTCCCTCAGCTAATTTTTTCTTGGAGTAATCTTGACAACCTAGTTTTATATTTTACTCAATTCTTCATACTTGCTGTAATGTTTGAAACTGCAATCACCCTTTACAGGGTAGGGGGTCTGCAACAAATAACCGAAAACACCATTGGTTAG 2649 0.4017 MGAEPQISRSLINRIYAPLANEIHFAAPIPSLRTNELELVRGVLRILQGFSGSLFSWDHSGSSFRAKSGVYVTHLSLKSLHSLLNQFIHAATCLQLVEITLNKVENAVAKPPPTLKAFASSASAWLKRLRNIALKEEMSTTNADGLTTPTLLGLANSLSSLCSGAEFLLRIVHEAIPAVYFEFGASVPAAELAVHVLDYLHKKLDEVCLVQGGEEEAYQMVLYMYLGSLLPYIEGLDSWLFEGILDDPSDEMFFFANKEVSVDEAEFWEKSYLLRILQHSKFDSEYSSTNYVGDSVPASNDKKEMGRRESISLSSTNKGKEQSTRDRPACPFFIKDLAKSIVSAGKSLQLMRHVSNSLAVCSKGSNCEIGSTKYLNHGLYPSQRMAGLTLSEVFSVSLAGLIGHGDHVCKYFWQDDLCESVSVSSFVSNVNVSEEKTENDNNENLTAPPYSEKIWYKFLIDALSQKRSTDLKLKCEDINNDARDLRGARVVEDELLLLRSCLENPVITVCRTNLGKNGDALKTLNLSRKFCLPSLNDEGLRKSIFDGESTSFSRKEGTNYSFGFQFGESEYIRSQEERKLLEMLFPFPTILPSFQDDLPVSELLPFQRNSTLPSRVLRWMQNVDLRTTPLPLVIMQYCLTVYIQKQVDYIGVNMLLKLMNEWRLMDELAVLRAIYLLGSGDLLQHFLTVIFNKLDKGETWDDDFELNTILQESIRNSADCMLLSAPDSLVVSLVKHLGDGDEEGSTAGTVLSTPHKSHVNSFGINGLDMLKFTYKVPWPLELIANAEAIKKYNQVMRFLLKVKRAKFVLDKVRRWMWKVLLHITTHFSSVEHVLPQLIFSWSNLDNLVLYFTQFFILAVMFETAITLYRVGGLQQITENTIG. 883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01545 882 Pfam Gamma tubulin complex component C-terminal 664 818 IPR040457 GO:0043015
Seca4g01545 882 Gene3D - 664 863 IPR042241 -
Seca4g01545 882 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 31 818 IPR007259 GO:0000226|GO:0000922|GO:0005815|GO:0007020|GO:0043015
Seca4g01545 882 MobiDBLite consensus disorder prediction 297 326 - -
Seca4g01545 882 Pfam Gamma tubulin complex component N-terminal 40 366 IPR041470 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01545 Seca-Chr4 24955957 24964010 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01545 27 711 Glycosyltransferase AT1G20570 50.636 0.0 614
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01545 K16572 - gmx:100782299 1345.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01545 4 24955957 24964010 Seca4g01545 4 24955957 24964010 ECH