Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01501 ATGAAGGTATTGGTAACAGGTGCATCCGGCTACCTTGGGGGAAGGCTCTGTGATGCCCTGCTCCGACAAGGGTACTCCGTCAGGGTCCTCGTCAGACCCACCAGCGATCTCTCCGCCATTCCTTCCCCCTCCGAAATCTTCTACGGTGACATCACCGATTATTCCTCTCTCCTCGCCGCCTTCTCCGGTTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTCGAGCCCTGGCTCCCCGATCCCTCTAAATTCTCCTCAGTTAACGTCGGAGGATTGAAAAATGTGTTGGAGGCGATGAAGCAGACTGACACAGTGGTGAAGCTCATATATACGTCGTCGTTTTTCGCTATTGGACCAACCAAAGGAGGCATTGCCGATGAGAATCAAGTCCATCAGGGGAAATTTTTCTGCACGGAATATGAGAAATCAAAGGTTGCTGCGGACAAGATTGCGGTGCAAACTGCGTCCGAGGGTGTGCCAATAGTGCTTCTTTATCCAGGAGTAATCTATGGGCCTGGCAAGGTCACCGCAGGAAACGTTGTTGCACGGATGTTGGTAGAACGGTTTAATGGTCGATTACCTGGATACATAGGCTATGGAAATGATAAATTTTCATTCAGCCATGTTGATGATGTGGTGGACGGGCACATTGCAGCAATGAAAAAGGGACAGCCTGGGAGCAGGTATCTACTGACGGGTGAAAATGCGTCGTTCAAACAAGTTTTTGATATGGCTGCGGTAATTACTGATACTAAAAAACCAATGCTTAGCATTCCTCTGTGGGTGATTGAAGCATATGGCTGGGTATCAGTTCTGTTCTCTCGAATCACTGGAAAGTTACCTCTCATCAGCCCACCGACGGTGCATGTTTTAAGACATCAGTGGGAGTATTCCTGCGAGAAAGCTAAAAAGGAGCTTGATTATAAGCCCAGAAGCCTGAGAGAAGGACTTGCAGAGAGGGTCATACACTTGGGATTATTTGCTGAAGATGTTCATCCATTACCAAGGTGCATCTGGTTACTTGGGGGAAGGCTCTGTGATGCCCTACTCCGACAAGGTTACTCCGTCAGGGTCCTCGTCAGACCCACCAGCGATCTCTCCGCCATTCCTTCCCCCTCCGAAATCTTCTACGGTGACATCACCGATTATTCCTCTCTCCTCGCCGCCTTCTCCGGTTGCTCCGTCGTCTTCCACCTCGCCGCTCTCGTCGAGCCCTGGCTCCCCGATCCCTCTAAATTCTCCTCAGTTAACGTCGGAGGATTGAAAAATGAGAAATCAAAGGTTGCTGCGGACAAGATTGCGGTGCAAACTGCATCCGAGGGTGTGCCAATAGTGCTTCTTTATCCAGGAGTAATCTATGGGCCTGGCAAGGTCACCGCAGGAAACGTTGTTGCACGGATGTTGATAGAACGCTTTAATGGTCGATTACCTGGTTATATAGGCTATGGAAATGATAAAATTTCGTTCAACCATGTTGATGATGTGGTGGACGGGCACATTGCAGCAATGAAAAAGGGACAGCCTGGGAGCAGGTATCTACTGACGGGTGAAAATGCATCGTTCAAACAAGTTTTTGATATGGCTGCGGTAATTACTGATACTAAAAAACCAATGCTTAGCATTCCTCTGTGGGTGATTGAAGCATATGGCTGGGTATCAGTATTGTTCTCTCGAATCACTGGAAAGTTACCTCTCATCAGTCCACCGACGGTGCATATTTTAAGACATCAGTGGGAGTATTCCTGCGAGAAAGCTAAAAAGGAGCTTGATTATAAGCCCAAAAGCCTGAGAGAAGGACTTGCAAAGGTACTACTCTGGTTGAAGAACTCGGGATTAATAAGATATTAG 1848 0.4848 MKVLVTGASGYLGGRLCDALLRQGYSVRVLVRPTSDLSAIPSPSEIFYGDITDYSSLLAAFSGCSVVFHLAALVEPWLPDPSKFSSVNVGGLKNVLEAMKQTDTVVKLIYTSSFFAIGPTKGGIADENQVHQGKFFCTEYEKSKVAADKIAVQTASEGVPIVLLYPGVIYGPGKVTAGNVVARMLVERFNGRLPGYIGYGNDKFSFSHVDDVVDGHIAAMKKGQPGSRYLLTGENASFKQVFDMAAVITDTKKPMLSIPLWVIEAYGWVSVLFSRITGKLPLISPPTVHVLRHQWEYSCEKAKKELDYKPRSLREGLAERVIHLGLFAEDVHPLPRCIWLLGGRLCDALLRQGYSVRVLVRPTSDLSAIPSPSEIFYGDITDYSSLLAAFSGCSVVFHLAALVEPWLPDPSKFSSVNVGGLKNEKSKVAADKIAVQTASEGVPIVLLYPGVIYGPGKVTAGNVVARMLIERFNGRLPGYIGYGNDKISFNHVDDVVDGHIAAMKKGQPGSRYLLTGENASFKQVFDMAAVITDTKKPMLSIPLWVIEAYGWVSVLFSRITGKLPLISPPTVHILRHQWEYSCEKAKKELDYKPKSLREGLAKVLLWLKNSGLIRY. 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01501 615 Pfam NAD dependent epimerase/dehydratase family 341 418 IPR001509 -
Seca4g01501 615 Pfam NAD dependent epimerase/dehydratase family 3 227 IPR001509 -
Seca4g01501 615 Pfam NAD dependent epimerase/dehydratase family 426 510 IPR001509 -
Seca4g01501 615 CDD AR_FR_like_1_SDR_e 3 321 - -
Seca4g01501 615 Gene3D - 340 422 - -
Seca4g01501 615 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 319 IPR036291 -
Seca4g01501 615 FunFam NAD(P)-binding Rossmann-fold superfamily protein 1 325 - -
Seca4g01501 615 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 341 609 IPR036291 -
Seca4g01501 615 PANTHER PROTEIN YEEZ 424 604 - -
Seca4g01501 615 Gene3D - 1 324 - -
Seca4g01501 615 Gene3D - 423 614 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01501 Seca-Chr4 24240918 24250490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01501 3 233 Miscellaneous Gene Families AT1G09510 31.200 3.23e-21 93.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01501 K15891 - gmx:100792747 537.724
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01501 4 24240918 24250490 Seca4g01501 4 24240918 24250490 ECH