Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01486 ATGGGTGGTGCTCACAGTCGCGAAGATCTTCTAGAAAGTTCCGACTCAGAACAAGAACGAGAAGAAGCAGAAGAAGAAAACTACGAAGATGCAACCGAAGGCGATTCGGAACGGAGAGTCAAAACTCCGTCATCACTCGATGACGTCGAGGCCAAACTCAAGGCCCTCAAGCTCAAATACTCTTCAACCCCCAACGTCAAGAACGCCGTTAAGCTTTACCTCCACATTGGTGGAAACACCCCCAAAGCCAAATGGGTAACCTCCGAAAAACTCACTACTTACTCTTTCGTTAAGACCCACCAAATCGACGGAGACAACAGCGACGATGACGACGACGATGAAGAAGAAGGTGGAGATGAATCGTGGTGGGTTTTGAAGGTTGGTTCAAAAATTCGATCCAAGGTGAGTGCTGAGATGCAATTGAAACCCTTCGGCGACCAGCGGCGCGTGGATTTCGTCGCGCGTGCTGTTTGGGCTATGAAGTTCTTCACGGACCAGGATTACAATTCCTTTGTCGCGGAATTTCAGAAGTGTATGTTTGAGAACACGCATGGCGTTGAAGCCAACGAAGCGAACAAGCTCAAGATTTATGGTAAGGATTTCATTGGTTGGGCGGAACCAGAAGCTGCTGATGATTCTATGTGGGAAGACGCTGAAGAAAGCCTCTCTAAGAGCCCTGGTTCCGCCACGCCGGTGCGAGCGACCCAGGATTTGAGGGAGGAGTTTGAAGAAGCCGCAAATGGTGGGATACAAAGCTTGGCGCTTGGTGCTTTGGACAATAGTTTCTTGGTAAGCGACAATGGAATTCAGGTTGTGAGGAATTTCGCTCATGGGATACATGGGAAAGGTGCTTTTGTTAATTTCAGTGGTGGATATCAAAATGGGTCTTCTTCTTCGTCTTTGGTGCATTGTACTCCTAAAAAGACGCTTCTCATGAAGGCAGAGACCAACATGCTTCTCATGAGTCCATTGGGTGGTGGTAAGCTTCATTCAACTGGTCTTCATCAACTTGATATTGAGACTGGGAAGGTTGTGACTGAGTGGAAGTTTGGAAAGGATGGAACTGAGATTACAATGAGGGATATCACAAATGATAGTAAAGGTGCTCAGATGGATCCTTCAGGATCAACTTTTCTAGGATTGGATGATAACAGGCTTTGTAGGTGGGATATGCGTGATCGCCATGGAATAGTTCAGCATCTTGCTGACTCTAATGCTGGTAGTGATACCCCTGTGTTGAATTGGGCACAAGGGCATCAATTCTCAAGGGGGACCAACTTTCAATGCTTTGCTACCACTGGTGATGGTTCCATTGTTGTTGGATCTCTGGATGGAAAGATCCGCCTCTATTCAATTAACTCTATGAGGCAGGCAAAAACAGCTTTTCCTGGCCTTGGCTCGCCTATTACTCATGTGGATGTTACTTATGATGGCAAGTGGATTGTGGGTACAACGGATACATACTTGGTTATTATTTGTACCATCTTTACTGACAAAGATGGAAAATCAAAAACTGGTTTTGCTGGACGCATGGGAAATAGGATTGCTGCTCCAAGGTTGCTCAAGCTTACTCCTCTGGATTCACATTTAGCTGGAGTGAATAACAAATTCCGTAATGCTCAGTTTTCATGGGTGACCGAGAATGGGAGGCAGGAGCGACATATAGTGGCTACAGTGGGGAAGTTCAGCGTGATATGGAACTTCCAACAAGTCAAGGATGGTTCTCATGAGTGCTACCGTAACCAACAGGGTCTAAAGAGTTGCTACTGCTACAAGATAGTCCTCAGGGATGATTCCATTGTTGATAGCCGATTTATGCATGACAAGTTTGCAGTCACAGATTCTCCTGAGGCCCCATTGGTAATAGCCACACCAATGAAAGTTAGCTCATTCAGCATATCCGGCAGGCGAAGAAGCTTCTCTTTTCATCCACGCTCTCTATTCAACAGTAAGACCATGGACAAACCAGGAGGGTACTTGTGGCTTGGGTCTGCTACTTCAGGAGCAGGAGTCACCCCACGTTGTAGGCGAATTTGTGTAGCAGCACAACAGCGACCTACATGGCTCCCAGGACTTGATCCCCCACCTTATCTTGATGGAACTCTGGCTGGAGATTTTGGGTTCGACCCACTTGGGCTTGGAGAGGATCCTGAAAGCTTAAGGTGGTATGTGCAGGCAGAGCTAGTTCATGCTCGCTTTGCAATGCTTGGGATCTTCGGAATTCTAGTGACAGATCTACTTCGCGTCACAGGAGCTAGTAAGATACCAGTTTGGTTTGAAGCTGGTGCCATAAAATATGAGTTTGCCAATACAGAGACGCTCTTCATCGTTCAACTACTTTTGATGGGGTTTGCTGAAACAAAGAGGTACATGGATTTCATTAGTCCTGGATCTCAAGCTAAAGAGGGGTCCTTCTTTGGATTGGAAGCTGCACTAGAAGGCTTAGAGCCAGGGTACCCTGGGGGTCCTCTGCTAAATCCTCTTGGCCTAGCAAAAGACATAAAAAACGCTCATGACTGGAAGCTTAAAGAGATTAAGAACGGGCGACTTGCAATGGTGGCAATGCTTGGCATCTTTGTACAAGCTTCAGTGACTCATGTTGGACCAATTGATAACCTTGTGGAGCATCTCTCTAATCCATGGCATAAAACTATTATTCAGACCCTTGCAAGTTCTTAG 2679 0.4647 MGGAHSREDLLESSDSEQEREEAEEENYEDATEGDSERRVKTPSSLDDVEAKLKALKLKYSSTPNVKNAVKLYLHIGGNTPKAKWVTSEKLTTYSFVKTHQIDGDNSDDDDDDEEEGGDESWWVLKVGSKIRSKVSAEMQLKPFGDQRRVDFVARAVWAMKFFTDQDYNSFVAEFQKCMFENTHGVEANEANKLKIYGKDFIGWAEPEAADDSMWEDAEESLSKSPGSATPVRATQDLREEFEEAANGGIQSLALGALDNSFLVSDNGIQVVRNFAHGIHGKGAFVNFSGGYQNGSSSSSLVHCTPKKTLLMKAETNMLLMSPLGGGKLHSTGLHQLDIETGKVVTEWKFGKDGTEITMRDITNDSKGAQMDPSGSTFLGLDDNRLCRWDMRDRHGIVQHLADSNAGSDTPVLNWAQGHQFSRGTNFQCFATTGDGSIVVGSLDGKIRLYSINSMRQAKTAFPGLGSPITHVDVTYDGKWIVGTTDTYLVIICTIFTDKDGKSKTGFAGRMGNRIAAPRLLKLTPLDSHLAGVNNKFRNAQFSWVTENGRQERHIVATVGKFSVIWNFQQVKDGSHECYRNQQGLKSCYCYKIVLRDDSIVDSRFMHDKFAVTDSPEAPLVIATPMKVSSFSISGRRRSFSFHPRSLFNSKTMDKPGGYLWLGSATSGAGVTPRCRRICVAAQQRPTWLPGLDPPPYLDGTLAGDFGFDPLGLGEDPESLRWYVQAELVHARFAMLGIFGILVTDLLRVTGASKIPVWFEAGAIKYEFANTETLFIVQLLLMGFAETKRYMDFISPGSQAKEGSFFGLEAALEGLEPGYPGGPLLNPLGLAKDIKNAHDWKLKEIKNGRLAMVAMLGIFVQASVTHVGPIDNLVEHLSNPWHKTIIQTLASS. 893
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01486 892 Pfam VID27 C-terminal WD40-like domain 258 580 IPR013863 -
Seca4g01486 892 Gene3D Chlorophyll a/b binding protein domain 687 892 - -
Seca4g01486 892 Gene3D - 236 524 IPR015943 GO:0005515
Seca4g01486 892 FunFam Chlorophyll a-b binding protein, chloroplastic 686 892 - -
Seca4g01486 892 SUPERFAMILY Chlorophyll a-b binding protein 679 890 - -
Seca4g01486 892 FunFam Vacuolar import/degradation Vid27-related protein 316 609 - -
Seca4g01486 892 MobiDBLite consensus disorder prediction 1 46 - -
Seca4g01486 892 SUPERFAMILY Putative isomerase YbhE 299 535 - -
Seca4g01486 892 Pfam Chlorophyll A-B binding protein 694 862 IPR022796 -
Seca4g01486 892 MobiDBLite consensus disorder prediction 15 31 - -
Seca4g01486 892 Coils Coil 11 31 - -
Seca4g01486 892 MobiDBLite consensus disorder prediction 32 46 - -
Seca4g01486 892 PANTHER VACUOLAR IMPORT AND DEGRADATION PROTEIN 27 1 637 IPR040458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01486 Seca-Chr4 24053023 24059048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01486 48 637 Acyl Lipid Metabolism Gene Families AT3G19240 69.900 0.0 841
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01486 - - gmx:100810233 1016.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01486 4 24053023 24059048 Seca4g01486 4 24053023 24059048 ECH