Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01410 ATGATCTCAATCTCTTCCGCAGAATTGAACTACTTAGTTTTCCGTTACCTTCACGAATCAGGTTTTACTCATTCTGCATTTGCATTTGGGTATGAAGCAGGAATTGATAAAAGTGGAATTGATGTTAATGTGGTTCCACCAGGTGCTCTTGTTACTTTCATACAGAAAGGAATTCAATACCTTGAGCTGGAAGCAAACTTGAGTGGTAGTGATGCAGACATGGATGAGGATTTCTCATTGCTACAGCCTCTTGATCTTATTACAAAGGACCCATATGAACTACTCAATATAGTCATAGCCAAAAAGGAAAATTTACGTCAACATAAGTTCAAATCAAATAAAATAGTGAATGACTTGAGTCAGGACAATGCCAGGGAACCTGTTCAAGAAACAGAGGAGAAAGAGAGGAAAGAAAAGGAAAATGAACACAGATCAGAAAAAATAAGTTTAGAGAAAGAAAAGGGTGAGTACAAAGATATACAACATCCAGATAAAAACCATATAGAGAATCATGAAGATAAGATTGTTGTTGAAAATCTAGAAAATAGAGCACATGGAGGGCCCGAGCCAATGGAGATCTCTGGAAGCTCCATGTCCCTGCCCAATGATACTCCATCAGGTGACGTGAAAATTCTGGAAGGCCATACCTCGGAGGTTTTTGCTTGTGCATGGAATCCATCAGCTCCACTTCTTGCATCTGGATCTGGGGATTCAACTGCTCGAATTTGGAAAATTGCTGATGGAACTTGTGACTCTAATATGCAAAATGAATCAGTAAATGTTGTGGTGCTGAAACACTTTATAGGAAGCACCAATGAAATAAGCAAGGATGTGACAACACTTGACTGGAATGGGGACGGAACATTGTTGGCAACTGGTTCCTATGATGGGCAAGCAAGAATATGGAGTAGAGATGGAGAGTTGAATAGTACACTAAGCAAGCACAAAGGTCCAATCTTTTCTCTAAAGTGGAACAAAAAGGGGGATTATCTTCTTAGTGGAAGTGTAGATAAAACAGCTATTGTTTGGGACATGAAGACTGGGGAATGGAAACAACAATTTGAATTTCACTCTGCCCCAACTCTTGATGTTGACTGGCGAAACAATGTTTCATTTGCAACATGCTCCACTGATAAAATGATATATGTCTGCAAAGTTGGAGACAATAGACCAATCAAAACTTTCTCAGGGCATCAGGATGAAGTTAATGCCATTAAATGGGATCCTACGGGTTCATTGCTGGCTTCCTGCTCCGATGATCACACTGCAAAAATATGGAGTTTGAAGCAGGACACATGTTTACATGATTTAAAGGAACATGTCAAGGAGATATATACAATTCGATGGAGCCCTACAGGACCCGGTACCAACAGCCCCAATCAGCAGTCACTGCTAGCAAGGTAA 1404 0.4017 MISISSAELNYLVFRYLHESGFTHSAFAFGYEAGIDKSGIDVNVVPPGALVTFIQKGIQYLELEANLSGSDADMDEDFSLLQPLDLITKDPYELLNIVIAKKENLRQHKFKSNKIVNDLSQDNAREPVQETEEKERKEKENEHRSEKISLEKEKGEYKDIQHPDKNHIENHEDKIVVENLENRAHGGPEPMEISGSSMSLPNDTPSGDVKILEGHTSEVFACAWNPSAPLLASGSGDSTARIWKIADGTCDSNMQNESVNVVVLKHFIGSTNEISKDVTTLDWNGDGTLLATGSYDGQARIWSRDGELNSTLSKHKGPIFSLKWNKKGDYLLSGSVDKTAIVWDMKTGEWKQQFEFHSAPTLDVDWRNNVSFATCSTDKMIYVCKVGDNRPIKTFSGHQDEVNAIKWDPTGSLLASCSDDHTAKIWSLKQDTCLHDLKEHVKEIYTIRWSPTGPGTNSPNQQSLLAR. 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01410 467 Gene3D - 2 90 - -
Seca4g01410 467 PANTHER WD40 REPEAT PROTEIN 4 466 IPR045183 GO:0003714|GO:0016575
Seca4g01410 467 Pfam LisH 8 33 IPR006594 GO:0005515
Seca4g01410 467 CDD WD40 209 453 - -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 271 303 IPR001680 GO:0005515
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 312 349 - -
Seca4g01410 467 SUPERFAMILY WD40 repeat-like 198 453 IPR036322 GO:0005515
Seca4g01410 467 ProSiteProfiles LIS1 homology (LisH) motif profile. 5 37 IPR006594 GO:0005515
Seca4g01410 467 MobiDBLite consensus disorder prediction 125 156 - -
Seca4g01410 467 FunFam F-box-like/WD repeat-containing protein TBL1XR1 2 93 - -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 212 245 - -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 312 353 IPR001680 GO:0005515
Seca4g01410 467 MobiDBLite consensus disorder prediction 116 156 - -
Seca4g01410 467 ProSitePatterns Trp-Asp (WD) repeats signature. 331 345 IPR019775 -
Seca4g01410 467 SMART WD40_4 260 303 IPR001680 GO:0005515
Seca4g01410 467 SMART WD40_4 205 244 IPR001680 GO:0005515
Seca4g01410 467 SMART WD40_4 388 427 IPR001680 GO:0005515
Seca4g01410 467 SMART WD40_4 305 344 IPR001680 GO:0005515
Seca4g01410 467 SMART WD40_4 347 385 IPR001680 GO:0005515
Seca4g01410 467 FunFam WD40 repeat-containing protein HOS15 201 467 - -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 395 436 IPR001680 GO:0005515
Seca4g01410 467 Pfam WD domain, G-beta repeat 307 344 IPR001680 GO:0005515
Seca4g01410 467 Pfam WD domain, G-beta repeat 390 427 IPR001680 GO:0005515
Seca4g01410 467 Pfam WD domain, G-beta repeat 264 303 IPR001680 GO:0005515
Seca4g01410 467 Pfam WD domain, G-beta repeat 209 244 IPR001680 GO:0005515
Seca4g01410 467 Gene3D - 201 467 IPR015943 GO:0005515
Seca4g01410 467 SMART Lish 5 37 IPR006594 GO:0005515
Seca4g01410 467 PRINTS G protein beta WD-40 repeat signature 231 245 IPR020472 -
Seca4g01410 467 PRINTS G protein beta WD-40 repeat signature 331 345 IPR020472 -
Seca4g01410 467 PRINTS G protein beta WD-40 repeat signature 414 428 IPR020472 -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 395 429 - -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 271 303 - -
Seca4g01410 467 ProSiteProfiles Trp-Asp (WD) repeats profile. 212 253 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01410 Seca-Chr4 22698385 22703686 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01410 268 464 Miscellaneous Gene Families AT5G08390 20.952 8.67e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01410 K04508 - gmx:100783690 794.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01410 4 22698385 22703686 Seca4g01410 4 22698385 22703686 ECH