Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01394 ATGCACACCACACAATGCCGGCTGCCTACTCCCACTTCATCTTGGGCTCGGCGGTGGCAACAGACTTGGGCCCGCATACTGCTTCCTCTCACCATTTGGATTTGTGTTTCAGCCACTCTTCGTTATGTGTATTACGGGGACTCTCGTATCCTTCTTGGGCCTGCCTCATCCCGTTTGGTGAAGGCTAGCTCTGTTTTTGTGAAGCAAGTTGAAGTATCAAACAAGCAAGATAATCAAGTTATTCTTCATGCCTGCAATGAGAACCCGGAATTAAGCTCACAAATTAATTGGACTGCCTCGAATTTCTTCCTTGTTGAAGCATATCAAAGCAAGGGAATTTCTTTGTGGTTAAATAAAGGCTCCACTATCCGTTTGAGGTGGGAAGCACATTCTAGTAGTTTGAATCAGCTACAAGGAATGGTGATCAAAGGAGAAAAGAAGATTGATCACCTACAACCTAAACAAACGAAGTTCCTCGGTGCAATTGCTGTTCGTAAGACTCTTAATAGTGGAGAAGCTGAATATATCGTTGAGGAAGATGATAGATACCACATTGGGGTTCAAAACATGAATGCCAGGAACATAATCATGACTATGAATGTTAATGTTTCAGCTAAGGTATATGATACCACCAAAGCCAATAAGAAGTGCTCTATTGCAAATGGAACTTGTAGGCTCAGTTTTCTTTTTCCTAACACTCACTATGTTATTCTCACGACTACCAACAATGGAGATGGGGAACCGTATGTTGAATTTACTTTAGTGGCTCGTGTACTGACCTACGTGTTACTATTAGGATTTATTATGATTGTTGTTTATCTGATTCTGAAATTCCTGGGAATATCTGATAGTGATGATCAGATTCAGAATACTAATGTGAGGGTAGACACATACAGATCAAGTAATGTAGTTGCAACACAAAATGAAACTGAGCCCTTGATGCAAGTTGAGTCAAATTCATTGTCATATGGAACCATTAAAGAAGATGATGATGAAGAATCAGAAGCATACAGTAGCTCTTCAGAGGAGTTATATGATGAAAAATTATGTGTCATTTGTTATGATGAACAACGTAACAGCTTCTTTGTTCCTTGTGGACATTGTGCCACTTGCTATGACTGTGCACAGAGGATTTCCGAGGGAGAGAGCAAAGTGTGTCCTATATGCCGAAGACTTGTTCACAAAGTACGAAGATTATTTCATAGTTAG 1209 0.4028 MHTTQCRLPTPTSSWARRWQQTWARILLPLTIWICVSATLRYVYYGDSRILLGPASSRLVKASSVFVKQVEVSNKQDNQVILHACNENPELSSQINWTASNFFLVEAYQSKGISLWLNKGSTIRLRWEAHSSSLNQLQGMVIKGEKKIDHLQPKQTKFLGAIAVRKTLNSGEAEYIVEEDDRYHIGVQNMNARNIIMTMNVNVSAKVYDTTKANKKCSIANGTCRLSFLFPNTHYVILTTTNNGDGEPYVEFTLVARVLTYVLLLGFIMIVVYLILKFLGISDSDDQIQNTNVRVDTYRSSNVVATQNETEPLMQVESNSLSYGTIKEDDDEESEAYSSSSEELYDEKLCVICYDEQRNSFFVPCGHCATCYDCAQRISEGESKVCPICRRLVHKVRRLFHS. 403
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01394 402 PANTHER OS05G0521000 PROTEIN 3 400 - -
Seca4g01394 402 Pfam Domain of unknown function (DUF4792) 82 147 IPR032008 -
Seca4g01394 402 SMART ring_2 350 389 IPR001841 -
Seca4g01394 402 Pfam Domain of unknown function (DUF4793) 173 274 IPR032010 -
Seca4g01394 402 Pfam Zinc finger, C3HC4 type (RING finger) 347 395 - -
Seca4g01394 402 SUPERFAMILY RING/U-box 338 396 - -
Seca4g01394 402 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 324 402 IPR013083 -
Seca4g01394 402 ProSiteProfiles Zinc finger RING-type profile. 350 390 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01394 Seca-Chr4 22552984 22555688 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01394 - - gmx:100794488 542.732
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01394 4 22552984 22555688 Seca4g01394 4 22552984 22555688 ECH