Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01388 ATGGATTCCCAAATGAAGAAAAAAAGAGTGACCCCCTTTCCCAAAACTCCTTATAACACCAGTGATGACATGACAGAATTAGAGTCAAGGGATCAGCTTTGCAGCAACCCTTGTTGTTTCTTTTGCACTATGAGAGAACCAGATGCATCTCTCAGAAGAGCTGGAATAGCAAGCTGCTTCAAAGAAATGCCTCTGAGAGAGAATCAAGAACATGTCTTGGTTCTTAGTGGACTGTGGCATATAGCTATGAGCCAACCCAATGATCCAGAGTTCCCTTCCCTTGGCATATTCAAGTGCATGGCAAATCTTATCCACAAAGGTATCAAAGACAGGACCTGGCTTCTCACCAATCAAAACATATACATACCTTATTATGCTGCTCATATTATTGGCTCTTACACTATGAATAAGGAAGAGTTTGCACAAATAGCTGTGCAATCAGGTGTGATTCCACCCTTATTGGAGCTGTTGAGTGGTAAGATAAGTTGGGTTGAACAAAGAGTTGCTGTTAGAGCACTTGGTCATTTAGCCAGTTATGAGAGTACTTTTGAATCAGTGGCAGAGTATGAACAAGAGGCTGTGAAATTGGCCTTAAACTTGGCTTCCACTTGCTTAGAAGTGGTCTATGTTGAGTTTGTAGGGATGAAGGATGTGACCAAAAGACTTGAATACCATAGGAACTTGCTTACAAGAGGCATTGGGGATTTGGAGATGGAGAATCACAAGGCTGAGGAATGGGCTAGTCAACTTCAGTGTTGGTCCCTTTATCTGCTTAATTGCTTTGCTTGCAAAGACAGGTCTCTGAATCTCATCTGCAAGATGGAGTTCCTGAAAGATTTGTGTGACATGTGGGGTGGATTGATAAATCACACATCACCAGCTGGTGTTGGATTGATTAGAATCCTATGCTATAATAAAGTAGGAAGGAAAAGCATTGCTGAGTTACCAAAAGTTATAAAGACTCTTGGTAACCTTTCAAGATCTTCAGATGATTGGCAGTACATGGGAATTGATTGTCTTGTACTACTTCTCAAGGACCCAGACACAAGGTACAAGGTTATTGATATTGCAGCTTCTTACCTTGTTGATTTGGTTGAACTTAGAAGCCTTGGAGATAAATCAAACGTGGGAGATACCATCACAAAGGTGCTCCTTTTGGAAAATCATAGTACTAAATTGAAATCCAATAGGCAAAAAATTGGAACAGCATTACAAGAAGTGGTGGATTTGAAGGTGGAAAAGAGGAAAAGGGAGAAACTAATGTCAGAGGAAAAATTAGAGGAAGCAAGGGTTTTGGTGAGTTTGATAAAGCAACAAGCTAATCAAATGTTCAGGTTGGGAAATGTAGAAGGAGCTTTATTGAAATATTGTGAAGCACTTGATGTTTGCCCTTTGAGGTATAGGAAAGAAAGAATGATGCTTTATAGTAACAAAGCACAATGTCATCTTCTGCTTAAGAATCCAGATTCAGCAATCAGTGACTCAACACGTGCTCTTTGTCTCTCCAACCCATCGAACACACACAGCAAAAGCCTTTGGAGAAGGTCACAAGCATATGACATGAAAGGAATGGCAAAAGAGAGCCTCATGGACTGTATAATGTTCATGAATGGTTGCATCAAATCAGATGAAACCAAACGTGTCAAGATTCCATATCACGCTGCACGCATGATCTGCAAACAGATGGATGCCACATGGCTCTTTGCCAATGCTCGCAGCTCAAAGGTAACAACAACACACAACAATTTAGTGGTGAAATTGAGAAAACAGAAAGAATGTAACGAAATTGAAGAACAACAGAACCATGAGGCGTTGATGATGGAAAAGAAAAGTCACATACCAGGTCTGTCTACCATTATTGAAGAGCCTTTTCAATTTCATTATCACACAAATGAAGCTGATGGTAGGAGAAAGATGGAAAGGACAAGAAGGAGATTAAAGAATGGTGTTATAGGCATAGCTGGACAAAATTAA 1974 0.4017 MDSQMKKKRVTPFPKTPYNTSDDMTELESRDQLCSNPCCFFCTMREPDASLRRAGIASCFKEMPLRENQEHVLVLSGLWHIAMSQPNDPEFPSLGIFKCMANLIHKGIKDRTWLLTNQNIYIPYYAAHIIGSYTMNKEEFAQIAVQSGVIPPLLELLSGKISWVEQRVAVRALGHLASYESTFESVAEYEQEAVKLALNLASTCLEVVYVEFVGMKDVTKRLEYHRNLLTRGIGDLEMENHKAEEWASQLQCWSLYLLNCFACKDRSLNLICKMEFLKDLCDMWGGLINHTSPAGVGLIRILCYNKVGRKSIAELPKVIKTLGNLSRSSDDWQYMGIDCLVLLLKDPDTRYKVIDIAASYLVDLVELRSLGDKSNVGDTITKVLLLENHSTKLKSNRQKIGTALQEVVDLKVEKRKREKLMSEEKLEEARVLVSLIKQQANQMFRLGNVEGALLKYCEALDVCPLRYRKERMMLYSNKAQCHLLLKNPDSAISDSTRALCLSNPSNTHSKSLWRRSQAYDMKGMAKESLMDCIMFMNGCIKSDETKRVKIPYHAARMICKQMDATWLFANARSSKVTTTHNNLVVKLRKQKECNEIEEQQNHEALMMEKKSHIPGLSTIIEEPFQFHYHTNEADGRRKMERTRRRLKNGVIGIAGQN. 658
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01388 657 Gene3D Tetratricopeptide repeat domain 436 546 IPR011990 GO:0005515
Seca4g01388 657 SMART arm_5 137 178 IPR000225 GO:0005515
Seca4g01388 657 SUPERFAMILY ARM repeat 114 356 IPR016024 -
Seca4g01388 657 Gene3D - 64 435 IPR011989 -
Seca4g01388 657 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 30 609 - -
Seca4g01388 657 SUPERFAMILY TPR-like 434 532 IPR011990 GO:0005515
Seca4g01388 657 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01388 Seca-Chr4 22389279 22392424 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01388 - - gmx:100777591 958.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01388 4 22389279 22392424 Seca4g01388 4 22389279 22392424 ECH