Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01384 ATGGCGTCGAGTTTCGATCGATGGGAACAAGATCCTTTCTTTAATGCCGCCGAAGAAGTTCAGGAATCTGCAGACAGGATGGAATCAACGTATAGGACATGGATTCATGCAAAGGAAGATTCGTCCAGTCCGTGGAATTCTGATGAACTTCGCCGAGATCTACATACTGCCCTTGGCACTGCTAAATGGCAGTTAGATGAATTTGAAAGGGCTGTCAGGTCAAGTTATAGCAAAAGCTCTAGTGAGGATGCAAGAAATAGGCACCAAGATTTTATTGTTGCCATTGATGACAAGATTTCAAAAGTTGAGCATTTGTTACAAGAATCAGCTCATTCAGGTAGCAGCAAGGCATCTATGCATTGGGTGTCTCTGGATGAAGGAGAACGAAATGAGCTTGCGTTGTTTCTTTCAGGAATGCCTGCTGCTGGAGGCAAAACACCCATTAAATGTGTCAGCAGAGACGGTGAAAATCCACAATTAAGTAATAAAGATCCATTTAGTAATTGTTCAAGCAATTTGCTTGTTTCATCTGGGTGGGGTTCCTCTGAAACCGTGGAGGAGAAATCACATGGGCTTCGCAGGGTGGCTAGTGCAGATGCTGATATGAGTTCTTGGAAAATTGCTGTTTCAGATGATGCGCAGCAACCGAGTTCTTCCAATGGCTCTTCTTATCCTATGCATAAGGTAGCCAGTCTCTCTGGATTTCTTAGTTCCATGGAATCCATCTCTAAATTGAAGTGGCCTAAGAATGGTTATAGAAAGCTGAAAGCAGTGAATCATCATCAAGAAACTGATAATGCACTACTACCATCAACTAATTTCAATCGGGGCATGAATGCATGCTATGAGAAAAGTAAGAGTTGCCTTGATAGTTGTGATGAATGCTATGATAAGCAACTCCATGGGTGGTATGGGGCTATCCAAAGACAGCTTCAAAGATCTCAATACCAAATGCAATACAATCGGCCTGTTCAAATAACTGTCTGGATTGTTATTCTTCTTTGCTTGATTGTTTTAATTGCTTTTTGCGCAATGTAG 1038 0.4191 MASSFDRWEQDPFFNAAEEVQESADRMESTYRTWIHAKEDSSSPWNSDELRRDLHTALGTAKWQLDEFERAVRSSYSKSSSEDARNRHQDFIVAIDDKISKVEHLLQESAHSGSSKASMHWVSLDEGERNELALFLSGMPAAGGKTPIKCVSRDGENPQLSNKDPFSNCSSNLLVSSGWGSSETVEEKSHGLRRVASADADMSSWKIAVSDDAQQPSSSNGSSYPMHKVASLSGFLSSMESISKLKWPKNGYRKLKAVNHHQETDNALLPSTNFNRGMNACYEKSKSCLDSCDECYDKQLHGWYGAIQRQLQRSQYQMQYNRPVQITVWIVILLCLIVLIAFCAM. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01384 345 PANTHER OS05G0443700 PROTEIN 1 337 - -
Seca4g01384 345 Pfam Syntaxin 6, N-terminal 11 103 IPR015260 GO:0016020|GO:0048193
Seca4g01384 345 SUPERFAMILY t-snare proteins 10 108 IPR010989 GO:0016020|GO:0016192
Seca4g01384 345 CDD SNARE_NTD_STX6-like 11 103 - -
Seca4g01384 345 FunFam Syntaxin 10 8 109 - -
Seca4g01384 345 Gene3D - 9 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01384 Seca-Chr4 22319736 22322902 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01384 - - gmx:100795867 493.426
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01384 4 22319736 22322902 Seca4g01384 4 22319736 22322902 ECH