Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01357 ATGTACATGTGGAATCAGATCAGAGACAGAGAAACAGGGAAATTGCGAGCTGATTCTTTCGCTAATCGCATAAAGTCGAATCGCATTTCTCAACTTGAGTTGTCCAATCACAAAGACATTGTTTCCCCTCACAAAGGCGCCATCAACTCTCTTCAGATTGATCTGACAGAGGGAAGATATTTGTTATCTGCTGCATCCGATGCATCAGTGGCTGTTTACGACGTTCAACGCCCCACCGATTACGAAGCAGGTGGTGTGATATCCAAATATAGGTCCATATTTGTTGTTGACAAGCAACACCAACTGGCACATAAGTATGCTGTATCCACAGCAATATGGTATCCCATTGACACTGGCTTATTCATCACTGGCTCATATGATCATCACATTAATGTTTGGGACACTAACACCACCCAGGTGGTGGTCAATTTCAAAATGCCTGGAAAGGTCTATAGAACTGCAATGTCCACATTATCAACATCTCACACGCTTATAGCTGCTGGAACTGAAGATGTCCAAGTTCGCCTTTGTGATATTACTTCTGGGGCATTTGCTCACACTCTGTCCGGTCACCGTGATGGAGTAATGAGTGTTGAATGGTCTGCTTCAAGTGAATGGGTCTTGGTTACTGGGGGATGTGATGGTGCAATACGATTTTGGGACATTAGACGTGCTGGCTGTTTCCTAGTTTTAGATCAATCTCGGACTCAGCTTGGAAGGCGTCCACCTATACTAAAACGCTCCATGATATCTAAGTCACAGGATTCAAGTACAAAAAATCGTGCTGCACAAAAGAAATTTGTTAATGGCAATGGTAGCAGACAACTGCCAATTGGTAGAGCTCCATCTAAGGGACCAATTAAGCAGAGATTACATCCAGGAATGCTGTCTACTCAGGATCGTGCAACTGCTCATTATGGTGCTGTGACAGGGTTAAAAGTAACAGGGGATGGCATGTATCTCTTAAGTTCAGGGTCTGATTCCAGATTGAGGTTGTGGGATATTGAATCTGGCTGTGACACACTTGTGAACTTTGAAACTGTCCGGCTGCAAACAAACAAACCTATTCAATTAGCCACAACTCAAGACTCAACCCTTGTTTTTGTTCCATGCATGAGAACTGTGAAAGCATTTGATATGTGGTCTGGGAATGCACATGCAATATTACGTGGCCACTATGAATGTGTAAACTCTTGCTGGTTTAATCAACAAGATCAGGTATGTTCAAGAGGTGGTTGTTCATTTTCTTTGTCAACTCCTCCCTAA 1266 0.4313 MYMWNQIRDRETGKLRADSFANRIKSNRISQLELSNHKDIVSPHKGAINSLQIDLTEGRYLLSAASDASVAVYDVQRPTDYEAGGVISKYRSIFVVDKQHQLAHKYAVSTAIWYPIDTGLFITGSYDHHINVWDTNTTQVVVNFKMPGKVYRTAMSTLSTSHTLIAAGTEDVQVRLCDITSGAFAHTLSGHRDGVMSVEWSASSEWVLVTGGCDGAIRFWDIRRAGCFLVLDQSRTQLGRRPPILKRSMISKSQDSSTKNRAAQKKFVNGNGSRQLPIGRAPSKGPIKQRLHPGMLSTQDRATAHYGAVTGLKVTGDGMYLLSSGSDSRLRLWDIESGCDTLVNFETVRLQTNKPIQLATTQDSTLVFVPCMRTVKAFDMWSGNAHAILRGHYECVNSCWFNQQDQVCSRGGCSFSLSTPP. 422
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01357 421 ProSitePatterns Trp-Asp (WD) repeats signature. 208 222 IPR019775 -
Seca4g01357 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 101 143 IPR001680 GO:0005515
Seca4g01357 421 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 3 411 IPR042238 GO:0006283
Seca4g01357 421 SUPERFAMILY WD40 repeat-like 41 411 IPR036322 GO:0005515
Seca4g01357 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 302 338 - -
Seca4g01357 421 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 188 223 - -
Seca4g01357 421 Gene3D - 3 414 IPR015943 GO:0005515
Seca4g01357 421 ProSitePatterns Trp-Asp (WD) repeats signature. 321 335 IPR019775 -
Seca4g01357 421 Pfam WD domain, G-beta repeat 186 221 IPR001680 GO:0005515
Seca4g01357 421 Pfam WD domain, G-beta repeat 103 134 IPR001680 GO:0005515
Seca4g01357 421 Pfam WD domain, G-beta repeat 303 334 IPR001680 GO:0005515
Seca4g01357 421 SMART WD40_4 34 74 IPR001680 GO:0005515
Seca4g01357 421 SMART WD40_4 181 221 IPR001680 GO:0005515
Seca4g01357 421 SMART WD40_4 292 334 IPR001680 GO:0005515
Seca4g01357 421 SMART WD40_4 95 134 IPR001680 GO:0005515
Seca4g01357 421 FunFam Transducin/WD40 repeat-like superfamily protein 4 269 - -
Seca4g01357 421 MobiDBLite consensus disorder prediction 249 271 - -
Seca4g01357 421 PRINTS G protein beta WD-40 repeat signature 321 335 IPR020472 -
Seca4g01357 421 PRINTS G protein beta WD-40 repeat signature 208 222 IPR020472 -
Seca4g01357 421 PRINTS G protein beta WD-40 repeat signature 121 135 IPR020472 -
Seca4g01357 421 MobiDBLite consensus disorder prediction 248 289 - -
Seca4g01357 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 302 343 IPR001680 GO:0005515
Seca4g01357 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 41 83 IPR001680 GO:0005515
Seca4g01357 421 ProSiteProfiles Trp-Asp (WD) repeats profile. 188 223 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01357 Seca-Chr4 21966871 21970930 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01357 99 228 Miscellaneous Gene Families AT5G08390 27.692 3.75e-11 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01357 K10570 - gmx:100815581 708.368
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01357 4 21966871 21970930 Seca4g01357 4 21966871 21970930 ECH