Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01343 ATGCCAAGCTTCAGAATGAGAGTTCAGACAAACCCAATCTATGAACTAAAAGGATTGTGCATATTGATGAAGGAACGGGATCTCAACATTGTCGTTGCCACAGTCACAGTACTGCTTGTGATGCTATCATTGCTATGCACTACATCTGGGTCAACCACAATCAGCAACCTCCACCCTTTGATTCTAATACCTGGCAACGGAGGGAACCAACTAGAAGCCAGGCTAACCGATCAGTACAAACCCTCCAGCTTCGTATGCAACACATGGTACCCTCTTTTCAAGAACAAGAAAGGATGGTTCAGGCTTTGGTTTGATTCCAGTGTCCTACTTGCTCCTTTCACTCAATGCTTCGCTCACCGCATGACGCTTCACTACCACCCACAACTTGATGATTACTATAATACCCCTGGGGTTCTAACCCGAGTCCCTCGCTTTGGTTCCACCTACTTCCTTCGTTACCTCAATCCTCGTCTAAAGCATATTACCGAATACATGGCATCCCTGGTAGATTCATTAGAACAAGTTGGTTACATTGAGGGGGAAACTCTGTTTGGAGCGCCCTATGATTTTCGTTATGGTCTAGCTGCTCCAGGTCACCCATCTCAAGTGGGTTCCAAGTTCCTGAATGATCTAAAGAATTTGGTAGAAGAAGCAAGCATTTCAAATGGGGGGAAACCGGTAATACTGGTCTCCCACAGCTTAGGGGGTTTATTTGTCCTTCAACTCCTAAATCGAAACCCCTCCTCTTGGCGCAAGAAATTTATAAAACACTTTATAGCTCTCTCTGCTCCATGGGGTGGTGCTGTAGACGAAATGTTCACTTTTGCAAGTGGCAATGCCCTTGGAGTGCCCCTAGTGGACCCTTTGTTAGTGAGAGATGAACAGAGAAGCTCTGAGAGTAACCTTTGGCTTTTGCCTAATCCTAATGTATTTGATCCTAAAAATCCATTAGTGATCACTCCAAATAGAAGCTATTCAGCGCATGACATGGTTGATTTTCTCAAAGATATTGGTTTTCCTGAAGGGGTTTATCCTTATGAGACTCGGATTCTGCCTTTGATTGAGAAAATTGAAGCACCAGAAGTGCCTGTGACTTGTATTATAGGGACGGGTGTTAGAACAATGGAGAATTTGTTTTATAGGGATGGTGATTTTGATCAACGACCCGAAATTAATTATGGGGATGGTGATGGAACGGTGAACTTGGTCAGTTTGTTGGCGCTTCAGTCACAATGGAAAGATGAGAAAAATCAGTACCTGAAAGTGGTTAAGATTGATGGGGTGTCTCATACTTCAATACTAAAAGATGAAGTTGCACTTGATGAAATAATAGGTGAAGTTAATAGAATTAATTCTCATGTTCAGCATGGTATAGCCAACGGTAATGATTTTCCTACACCAAATGTACATTGGTGTCTCTTTTTACTTTTTTTTATTTTTTAA 1443 0.4234 MPSFRMRVQTNPIYELKGLCILMKERDLNIVVATVTVLLVMLSLLCTTSGSTTISNLHPLILIPGNGGNQLEARLTDQYKPSSFVCNTWYPLFKNKKGWFRLWFDSSVLLAPFTQCFAHRMTLHYHPQLDDYYNTPGVLTRVPRFGSTYFLRYLNPRLKHITEYMASLVDSLEQVGYIEGETLFGAPYDFRYGLAAPGHPSQVGSKFLNDLKNLVEEASISNGGKPVILVSHSLGGLFVLQLLNRNPSSWRKKFIKHFIALSAPWGGAVDEMFTFASGNALGVPLVDPLLVRDEQRSSESNLWLLPNPNVFDPKNPLVITPNRSYSAHDMVDFLKDIGFPEGVYPYETRILPLIEKIEAPEVPVTCIIGTGVRTMENLFYRDGDFDQRPEINYGDGDGTVNLVSLLALQSQWKDEKNQYLKVVKIDGVSHTSILKDEVALDEIIGEVNRINSHVQHGIANGNDFPTPNVHWCLFLLFFIF. 481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01343 480 Pfam Lecithin:cholesterol acyltransferase 100 336 IPR003386 GO:0006629|GO:0008374
Seca4g01343 480 Gene3D alpha/beta hydrolase 384 449 IPR029058 -
Seca4g01343 480 Gene3D alpha/beta hydrolase 107 302 IPR029058 -
Seca4g01343 480 PANTHER LECITHIN-CHOLESTEROL ACYLTRANSFERASE-RELATED 53 449 - -
Seca4g01343 480 SUPERFAMILY alpha/beta-Hydrolases 56 439 IPR029058 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01343 Seca-Chr4 21752176 21754643 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01343 23 451 Acyl Lipid Metabolism Gene Families AT1G27480 59.722 0.0 518
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01343 - - gmx:100804027 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01343 4 21752176 21754643 Seca4g01343 4 21752176 21754643 ECH