Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01311 ATGGCACCTTTGTTTGATTGGGGGGTGAAAGAGAGTCACAGGGGAACTCCAGTGGTAGTGAAGATGGAGAATCCCAATTGGTCTATGGTTGAGCTTGAAGGTCCTTCTGAGGAAGACTTGCTTATGACTGACCCGAATTCAAGAGACAAAGGAAGAGGCAAAAACGCAAAGCAACTCACTTGGGTTCTTCTCCTTAAAGCTCATAGAGCTGCTGGTTGCTTAACCTCCATTGCCCCTGCATTGTTGGGTCTAGTCTCCGCCGTGAAGCGCCGTGTGGCATCTGGAAGAACGGACACCGATGCCGACAATGATATTCGTGGTGGTGGCAGGGAGAAGGAGAACCCTACTGTGAAGAGCAGGTTCTATTCGTGTATTAAAGTGTTTCTTTGGTTGTCTGTGTTTCTCTTGTGTTTTGAAGTGGCTGCTTACTTTAAAGGTTGGCACTTTGGTGCCCCCCATCTTCAGTTGGAGTATTTGTTGTGGGCACCCTCATTTGGGGTTAAAGATTTTTTCGATTGGCTTTATGCTCGGTGGGTTTTGATTAGGGTGGAGTATCTTGCTCCTCCTCTGCAATTCCTTACCAATGCTTGTATTATCCTGTTCCTTTTTCAGAGTTTGGATAGGTTGGTTCTTTGTTTAGGATGTTTTTGGATCCGATTTAAGAAGATTAAACCTGTTCCAAAAGATGGTGCTGTAGATCTTGAATCTGGGGAGAAAGGTTTTTGCCCCATGGTACTAGTGCAGATCCCCATGTGCAATGAGAAAGAGGTTTATCAGCAATCCATTGCTGCTGTTTGTAATTTGGATTGGCCAAAGTCCAAGTTGCTAATTCAAGTTCTTGATGATTCTGATGATCCAGCAACACAGTTGCTGATCAAGGAGGAGGTCCAAAAATGGCAACAAGAGGGTGCCAACATTTTGTACAGGCACCGTGTAATTCGAGACGGTTACAAGGCCGGTAATCTTAAATCTGCCATGAATTGTAGCTATGTGAAAGACTATGAATTCGTTGCGATTTTTGATGCCGATTTTCAGCCTACACCGGATTTCCTTAGGAAAACCGTTCCGCATTTTAAGGATAACGACGAATTAGGGCTTGTTCAAGCAAGATGGTCCTTCGTGAACAAGGATGAGAACCTGCTAACAAGGTTGCAGAACATTAATTTGTCTTTCCATTTTGAGGTTGAACAGCAAGTAAATGGGATTTTCATTCATTTCTTTGGGTTCAATGGAACGGCTGGAGTGTGGAGAATAAAGGCTTTAGAGGATGCTGGTGGTTGGTTGGAGAGGACCACTGTTGAGGACATGGACATTGCTGTCCGAGCTCATCTTCATGGCTGGAAATTTATTTTCCTCAATGACGTTGAGTGCCAGTGCGAGCTACCTGAATCCTATGAAGCTTACAGGAAACAGCAGCATAGATGGCATTCTGGGCCAATGCAGTTGTTCCGCCTTTGTTTGCCTGATATCATAAAGTCCAAGATAAGTGTATGGAAGAAATTCAATATGATATTTCTCTTCTTCCTTCTTAGGAAACTCATATTACCATTCTATTCATTCACCCTGTTTTGTATAATACTGCCTATGACAATGTTCGTACCCGAGGCCGAGCTTCCTGCATGGGTTGTTTGTTATATCCCTGCCGCCATGTCATTTCTTAACATTCTCCCAGCTCCAAAATCTTTCCCTTTTATTGTTCCCTATCTCCTATTTGAGAATACCATGTCAGTTACCAAATTCAATGCCATGATCTCTGGTCTATTCCAGCTCGGTAGTGCATACGAGTGGGTGGTCACTAAGAAATCAGGTCGATCTTCGGAGGGTGATCTGGTCTCATTGATTGAGAAACCAAAGCATCAAAGAGGATCCTCAGCACCTGATCTTGAGGAAATTAAAGAGGAAATTCTAAAGCAGCAGCAAAAGGTGTCTAAGAAGAAGAAAAAGCATAACAGAATATACATGAAGGAACTTGCATTGGCCTTTCTACTCCTAACAGCCTCAGCAAGGAGTCTCCTCTCTGCTCAAGGGATCCACTTTTACTTCTTGTTATTTCAGGGCATATCATTCCTTTTAGTTGGTCTAGACTTGATTGGTGAACAAGTGGACTGA 2109 0.4348 MAPLFDWGVKESHRGTPVVVKMENPNWSMVELEGPSEEDLLMTDPNSRDKGRGKNAKQLTWVLLLKAHRAAGCLTSIAPALLGLVSAVKRRVASGRTDTDADNDIRGGGREKENPTVKSRFYSCIKVFLWLSVFLLCFEVAAYFKGWHFGAPHLQLEYLLWAPSFGVKDFFDWLYARWVLIRVEYLAPPLQFLTNACIILFLFQSLDRLVLCLGCFWIRFKKIKPVPKDGAVDLESGEKGFCPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKSKLLIQVLDDSDDPATQLLIKEEVQKWQQEGANILYRHRVIRDGYKAGNLKSAMNCSYVKDYEFVAIFDADFQPTPDFLRKTVPHFKDNDELGLVQARWSFVNKDENLLTRLQNINLSFHFEVEQQVNGIFIHFFGFNGTAGVWRIKALEDAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIIKSKISVWKKFNMIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPAAMSFLNILPAPKSFPFIVPYLLFENTMSVTKFNAMISGLFQLGSAYEWVVTKKSGRSSEGDLVSLIEKPKHQRGSSAPDLEEIKEEILKQQQKVSKKKKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVD. 703
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01311 702 Coils Coil 628 648 - -
Seca4g01311 702 Pfam Glycosyl transferase family group 2 337 542 IPR001173 -
Seca4g01311 702 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 237 460 IPR029044 -
Seca4g01311 702 FunFam probable xyloglucan glycosyltransferase 5 236 461 - -
Seca4g01311 702 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 177 699 - -
Seca4g01311 702 SUPERFAMILY Nucleotide-diphospho-sugar transferases 245 522 IPR029044 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01311 Seca-Chr4 20794237 20797885 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01311 1 702 Miscellaneous Gene Families AT4G07960 78.711 0.0 1091
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01311 - - gmx:100805969 1244.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01311 4 20794237 20797885 Seca4g01311 4 20794237 20797885 ECH