Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01308 ATGAGAGAGAAGGCTGCCTCCCTTCCCAATGTACGATTGGAGCAAGGAACAGTTACTTCCCTACTTGAAGAGAAGGGGGCAATTAAAGGTGTGCAGTACAAAACAAAAGATGGTCAGGAATTATCTGCATGTGCACCCCTTACCATTGTTTGTGATGGCTGTTTCTCAAACTTGCGCCGTTCTCTTTGTAATCCTAAGGTAGATGTTCCCTCTTGTTTTGTTGGCTTAGTTTTGGAGAATTGTCAGCTTCCATATGCAAATCATGGCCACGTCATACTGGGAGATCCTTCGCCGATTCTGTGCTATCCTATAAGTAGTACAGAAGTTCGCTGTCTGGTTGATGTTCCTGGTCAGAAGGTTCCATCTATTTCCAATGGTGAAATGGCTAGGTATTTGAAGACAGTGGTAGCTCCACAGGTCCCCCCTGAGATTTATGATGCTTTCATAGCTGCAGTGGACAAAGGCAACATAAGGACAATGCCAAACAGAAGCATGCCAGCAGCTCCTTATCCTACTCCCGGAGCCCTTCTGATGGGAGATGCATTCAACATGCGCCATCCTCTAACGGGAGGTGGAATGACTGTGGCACTATCTGATATAGTAGTGCTGCGAAATCTTCTCAAGCCTTTGCGTGACCTGAATGATGCACCAAAACTCTGCAAATACCTTGAGTCCTTTTATACCTTGCGTAAGCCTGTGGCCTCCACCATAAATACGTTGGCAGGAGCTCTTTACAAGGTTTTTTGTGCGTCACCTGATCCGGCGAGGAAGGAAATGCGCCAAGCTTGCTTTGATTATCTGAGTCTTGGGGGTCTATTTTCACAAGGGCCGGTCTCTCTGCTTTCAGGATTAAACCCTCGGCCATTGAGCTTGGTTCTCCATTTCTTTGCTGTTGCAATATATGGTGTTGGCCGTTTACTACTACCCTTTCCTTCCCCTAAACGCATATGGATTGGAGTCCGATTAATCACTAGTGCATCCGGAATCATCTTGCCCATAATTAAGGCAGAAGGAGTCCGTCAGATGTTCTTCCCTGCAACTGTTCCAGCATATTACAGAACTCCCCCAGCTGCATGA 1077 0.4661 MREKAASLPNVRLEQGTVTSLLEEKGAIKGVQYKTKDGQELSACAPLTIVCDGCFSNLRRSLCNPKVDVPSCFVGLVLENCQLPYANHGHVILGDPSPILCYPISSTEVRCLVDVPGQKVPSISNGEMARYLKTVVAPQVPPEIYDAFIAAVDKGNIRTMPNRSMPAAPYPTPGALLMGDAFNMRHPLTGGGMTVALSDIVVLRNLLKPLRDLNDAPKLCKYLESFYTLRKPVASTINTLAGALYKVFCASPDPARKEMRQACFDYLSLGGLFSQGPVSLLSGLNPRPLSLVLHFFAVAIYGVGRLLLPFPSPKRIWIGVRLITSASGIILPIIKAEGVRQMFFPATVPAYYRTPPAA. 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01308 358 Gene3D - 1 248 IPR036188 -
Seca4g01308 358 SUPERFAMILY FAD/NAD(P)-binding domain 2 269 IPR036188 -
Seca4g01308 358 Pfam Squalene epoxidase 45 317 IPR013698 GO:0004506|GO:0016020|GO:0050660
Seca4g01308 358 FunFam Squalene monooxygenase 2 1 268 - -
Seca4g01308 358 PANTHER SQUALENE MONOOXYGENASE 1 356 IPR040125 GO:0004506|GO:0016126
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01308 Seca-Chr4 20744647 20747960 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01308 1 356 Miscellaneous Gene Families AT1G58440 82.584 0.0 618
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01308 K00511 - gmx:100820031 677.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01308 4 20744647 20747960 Seca4g01308 4 20744647 20747960 ECH
Seca4g01308 4 20744647 20747960 Seca4g01308 4 20744647 20747960 PCT