Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01270 ATGGCGGAGGAAGCACAGTATCCATCGGGAACGGAATCACTGAAGCGCAAGTACGAAGAGCAACCCACCGCCACCCCCGCCAGCATCGAGCTCGCGAAGCAGCGTGCTCAAGAGGTTGCTGCTCGCCTCCTCAGTGGTGCTCCTTCCCTCGATGCCAAGCGACCCAAGGCTGACAACGGTCCTCCTGCAACTGGCTTCGATTCCCTCGATGCCAAGCCTCAATACTCAGCTCCTTCGGTTGCTCCCGTCTCTTATGGGCATCAAGGTACGAGCAAGAAGATAGATATCCCTAATGGCAGGGTAGGTGTTATTATTGGTAAAGGCGGGGAGACCATCAAGTATCTTCAATTGCAGTCTGGGGCCAAAATCCAAGTTACCCGTGATATGGACGCCGACCCCAATTCTCCAACTAGGACGGTTGAGCTCACTGGTACTCCTGAAGCAATTGCCTCTGCTGAGAAACTCATCAACGAAGTTCTTGCTGAGGCTGAAGCTGGGGGTTCTGGCATTGTTGCACGACGACTGACTGGCCAAGCTGGGTCTGATGAATTTGTTATGAAAATCCCAAATAATAAGGTTGGCCTTATAATTGGTAAAGGAGGAGAAACAATAAAGAATATGCAAGCTTCAACTGGAGCACGAATTCAGGTGATACCTTTGCATCTTCCCCCAGGTGACACATCCACGGAAAGAACATTAAAAATTGATGGAACCCCTGATCAAATTGAGTCAGCAAAACAGTTGGTTAATCAAATCATCAGTGGTGAGGGTTATAGTGTCTATTGGACAATTGGTAACACTAATATGAATCTCTTTGTTGGTGTTCCCTCAGCATGCCCTGGTATGGTTCTAGATCTCTGTTTTGATATTTATTATCAAGGGCAGGAAATGGTGTGCTTCTGCTGGAGTAACTCAGTTTTATCACGAACCAGTACGAATCGTCTCAGAAATCCAGCAATGTCTGGTGGTTATTCTCAGCAAGGTTACCAATCCCGACCACCATCTAGCTGGGCCCCCCCTGGTGCTCCAATGCAACAACCTGGTTATGGCTATGTGCAGCCTGGAGCATACTCTGGTCCATCATCTCAGTACAACATGCCTCAGCCTCCTTATGCAGGCTATCCTCCCCAGCAATCTGGTGGATATTCCACCAATTGGGACCAGTCCACTGCACCACCTCACCAGCAGTCTACCAATGCTGGTGGTTATGATTACTACAGTCAGCAGCCACCCCAACAGCAAAATCCTGGGGGTCCTGCACCGCCAGCTGATGGGTCTACATACAATTACAGTCAGCCACCTTCCTCTGGTTATAACCATCCAGGACAAGGTTATGGTCAGGACAGCTATAGTGCGTACAATGCACAGCCACAGTCAGGGTATGGTCAGCCACCAGCATATGACCAGCAGCAAGGTTATGGCTCAGCTCCCAGCTATGGTAGTGGGAGTAACCCAGCACAAGAGGGCCAAACTTCCAACTATGGATCACAAGGAGATTCGTCCCAAGCTCCACCTGCTCAATCCTCAACAATTGCCCAGCAAGGTTATGCTACCAACCAACAGCCAAGCTCAAACACTGGCAACTATCCGGCTCAAGGAGCACAACCAGGCTATGGAATACCACCCCCAACCTCCCAGGCAGCTTATGGCAATCAGCCACAGTCTGGTTATGGACCTGGCTATGGACCCCCTCAATCTCAAAAGCCAAGTAGCACTCCACCTGTTTATGGACAGTCACAGTCACCTAGCACAGCAGGAGGCTATGGACAATCAGCATATCCTCCCACCCAGCCCCCACCTTCTGGGTATGCTCAACCAGAATCAGGTCAAAGAGCACCACCATCTGGTTTTGGTGGTGCAGTGCAACCAGGGTATGGTCCTCAATCATATGGTGCTCCTCAGGGTGGCCAGCCTGGTTATGGTCAAGCACCACCACCATACGGGAACAGTTCTTATGGTGCTGGTTATACTCAGACTCCAGCATATGCTAGTGATGGTAACGCAGGTGGGAATAGTCGTGGAAGCTATGATGCAGCACCTCCACAGGCTGTTCAACAGGGTAGTGTTGCTAAAGCATCACCTCAGAGTTGA 2091 0.5041 MAEEAQYPSGTESLKRKYEEQPTATPASIELAKQRAQEVAARLLSGAPSLDAKRPKADNGPPATGFDSLDAKPQYSAPSVAPVSYGHQGTSKKIDIPNGRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNSPTRTVELTGTPEAIASAEKLINEVLAEAEAGGSGIVARRLTGQAGSDEFVMKIPNNKVGLIIGKGGETIKNMQASTGARIQVIPLHLPPGDTSTERTLKIDGTPDQIESAKQLVNQIISGEGYSVYWTIGNTNMNLFVGVPSACPGMVLDLCFDIYYQGQEMVCFCWSNSVLSRTSTNRLRNPAMSGGYSQQGYQSRPPSSWAPPGAPMQQPGYGYVQPGAYSGPSSQYNMPQPPYAGYPPQQSGGYSTNWDQSTAPPHQQSTNAGGYDYYSQQPPQQQNPGGPAPPADGSTYNYSQPPSSGYNHPGQGYGQDSYSAYNAQPQSGYGQPPAYDQQQGYGSAPSYGSGSNPAQEGQTSNYGSQGDSSQAPPAQSSTIAQQGYATNQQPSSNTGNYPAQGAQPGYGIPPPTSQAAYGNQPQSGYGPGYGPPQSQKPSSTPPVYGQSQSPSTAGGYGQSAYPPTQPPPSGYAQPESGQRAPPSGFGGAVQPGYGPQSYGAPQGGQPGYGQAPPPYGNSSYGAGYTQTPAYASDGNAGGNSRGSYDAAPPQAVQQGSVAKASPQS. 697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01270 696 MobiDBLite consensus disorder prediction 42 91 - -
Seca4g01270 696 MobiDBLite consensus disorder prediction 1 27 - -
Seca4g01270 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 184 256 IPR036612 GO:0003723
Seca4g01270 696 Pfam KH domain 93 158 IPR004088 GO:0003723
Seca4g01270 696 Pfam KH domain 185 250 IPR004088 GO:0003723
Seca4g01270 696 MobiDBLite consensus disorder prediction 314 696 - -
Seca4g01270 696 MobiDBLite consensus disorder prediction 314 334 - -
Seca4g01270 696 SUPERFAMILY Eukaryotic type KH-domain (KH-domain type I) 91 167 IPR036612 GO:0003723
Seca4g01270 696 ProSiteProfiles Type-1 KH domain profile. 181 249 - -
Seca4g01270 696 MobiDBLite consensus disorder prediction 377 413 - -
Seca4g01270 696 ProSiteProfiles Type-1 KH domain profile. 89 156 - -
Seca4g01270 696 SMART kh_6 88 161 IPR004087 GO:0003676
Seca4g01270 696 SMART kh_6 180 254 IPR004087 GO:0003676
Seca4g01270 696 Gene3D K Homology domain, type 1 84 180 IPR036612 GO:0003723
Seca4g01270 696 MobiDBLite consensus disorder prediction 678 696 - -
Seca4g01270 696 Gene3D K Homology domain, type 1 183 256 IPR036612 GO:0003723
Seca4g01270 696 MobiDBLite consensus disorder prediction 545 591 - -
Seca4g01270 696 MobiDBLite consensus disorder prediction 651 671 - -
Seca4g01270 696 MobiDBLite consensus disorder prediction 425 532 - -
Seca4g01270 696 PANTHER KH DOMAIN CONTAINING RNA BINDING PROTEIN 79 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01270 Seca-Chr4 20104844 20110188 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01270 K13210 - gmx:100813135 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01270 4 20104844 20110188 Seca4g01270 4 20104844 20110188 ECH