Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01269 ATGGCTCTTCTGAGTCGAACCTCCTCACGCTTACCTCAACTGCTCTCGCCTCAGCGTGTAGTTTCCCTCCACACAACCCTCCCCTCCCTGTCTACATCTACATCTACACCCACACCATATGCTCGGGCGCCGCCTCCATCGGCTTCCTCCCCCGCCGGCGTTTCCAAGGCGGCGGAGTACGTGATCTCGAAGGTTGACGATCTCATGAACTGGGCTCGGCGTGGTTCAATCTGGCCCATGACCTTCGGTCTTGCTTGCTGCGCTGTCGAAATGATGCACACCGGTGCCGCTCGTTACGATCTTGATCGCTTCGGTATCATTTTCAGGCCCAGCCCTCGCCAATCTGACTGCATGATTGTTGCCGGCACTCTCACCAACAAGATGGCCCCCGCTCTTCGCAAGGTTTATGACCAAATGCCTGAACCTCGATGGGTCATCTCAATGGGAAGTTGTGCTAATGGAGGAGGATACTACCATTACTCCTACTCTGTTGTTAGGGGATGTGACAGAATTGTTCCTGTTGATATATATATTCCAGGCTGTCCTCCAACTGCTGAGGCTTTACTTTATGGACTCCTCCAGCTGCAGAAGAAGATCAATAGGCGCAAGGACTTCCTCCTTTGGTGGACAAAGTGA 636 0.533 MALLSRTSSRLPQLLSPQRVVSLHTTLPSLSTSTSTPTPYARAPPPSASSPAGVSKAAEYVISKVDDLMNWARRGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVISMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLLWWTK. 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01269 211 MobiDBLite consensus disorder prediction 27 53 - -
Seca4g01269 211 FunFam NADH-quinone oxidoreductase subunit B 2 52 211 - -
Seca4g01269 211 NCBIfam NADH-quinone oxidoreductase subunit B 61 201 IPR006138 GO:0008137|GO:0048038|GO:0051539
Seca4g01269 211 PANTHER NADH DEHYDROGENASE 54 210 - -
Seca4g01269 211 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 52 200 IPR006138 GO:0008137|GO:0048038|GO:0051539
Seca4g01269 211 Gene3D - 57 211 - -
Seca4g01269 211 SUPERFAMILY HydA/Nqo6-like 59 203 - -
Seca4g01269 211 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 167 183 IPR006138 GO:0008137|GO:0048038|GO:0051539
Seca4g01269 211 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 86 195 IPR006137 GO:0051536
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01269 Seca-Chr4 20099251 20102291 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01269 K03940 - gmx:100802267 354.755
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01269 4 20099251 20102291 Seca4g01269 4 20099251 20102291 ECH
Seca4g01269 4 20099251 20102291 Seca4g01269 4 20099251 20102291 PCT