Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01256 ATGGAGCGTGCAGCGAGGCTAGCTAACAAGGCGATTCTGAAGCGCTTGGTTCGGGAGGCGAAGCAATTGGGGCAGAAGGGTTCCCTGTTGAACCATTCAAGGTGTGTGTCCTCTGTTTCTCGCTCTGTTTTGAGAGGCAGGGGATCCGAAACAGAGAACTTTGTGAACAGGACAAAGAACCTCTCACGCAATGTTGATTCTCGATCCATTTCGGTTGAGGCACTCAAACCAAGCGACACTTTCCCTCGACGCCACAACTCTGCCACCCCTGAAGAACAGAGCAAGATGGCTCAGACATGTGGCTTCGATAATCTCGATTCGCTTATCGATGCCACTGTGCCTAAGTCGATCCGTCTGAGCGAGATGAAGTTCAGCATGTTCGATGAAGGGTTATCAGAGAGTCAAATGATGGAGCACATGAAGCATTTGGAATCGAAGAACAAGTGTTTCAAGTCATACATTGGAATGGGTTACTACAACACACGTGTTCCTCCTGTGATCTTGAGGAATATCATGGAAAACCCTGCTTGGTACACCCAATATACTCCTTACCAGGCTGAGATATCTCAGGGGCGTCTTCAGTCATTGATGAATTTTCAGACCATGATTACGGATCTCACTGCTCTTCCAATGTCAAATGCTTCATTGCTTGATGAAGGAACTGCTGCTGCTGAGGCAATGTCTATGTGTAATAACATTCACAAGGGAAAGAAAAAGACTTTTGTTATTGCCAATAACTGTCACCCTCAAACCATTGATATTTGCAAGACCAGAGCGGCTGGTTTCGATCTTGAGGTTGTCACCGTGGATGTTAAGGATATTGATTATAAATCAGGTGATGTTTGTGGTGTTCTTGTTCAGTACCCCGGCACTGAGGGTGAGGTTTTGGATTATGGAGAGTTTGTTAAGAAGGCTCATGCTCATGGGGTTAAGGTTGTGATGGCAACTGATCTATTGGCTTTGACTGTGTTGAAGCCTCCTGGTGAACTTGGGGCAGATATTGTTGTTGGCTCTGCTCAGAGGTTTGGAGTTCCAATGGGTTATGGAGGTCCTCATGCTGCGTTTTTGGCTACTTCCCAAGAGTATAAGAGGATGATGCCTGGAAGAATCATTGGTGTCAGTGTTGATTCTTCTGGAAAGCCAGCTTTGCGAATGGCCATGCAAACTAGGGAGCAACATATTCGTAGGGACAAGGCCACCAGCAACATTTGCACTGCTCAGGCACTGCTTGCAAACATGGCTGCTATGTATGCTGTATATCATGGGCCTGAAGGCCTTAAAACCATTGCAGAACGGGTTCATGGTCTTGCTGGGGTGTTTGCCCTGGGATTAAAGAAACTTGGAACAGTGGAAGTTCAGGATCTTCCCTTTTTTGACACTGTCAAGATTAAGACTGCCAATGCCCATGCAATTGCTGATGCTGCTCTCCAAAGTGAAATAAATTTGCGAGTTGTTGATGGGAACACTATCACTGTTGCCTTTGATGAAACAACCACCTTGGAGGATGTTGATAAGCTTTTCAAAGTTTTTGCTGGCGGCAAGCCTGTCTCCTTCACAGCTGCATCTCTTGCACCAGAAGTTCAGACAGCACTTCCTTCTGGACTAATTAGAAAGAGTCCTTATTTGACACATCCTATCTTTAACACGTACCACACTGAGCATGAGTTGCTCAGGTACATTCATAGGCTACAAGCAAAAGATCTCTCATTGTGCCACAGTATGATCCCACTAGGATCTTGTACAATGAAGTTGAATGCAACAACTGAAATGATGCCTGTGACATGGCCTAGCTTTTCTGATATTCACCCTTTTGCACCAGTTGAACAGGCTCAAGGTTATCAGGAAATGTTCGAAAATTTGGGTAAACTGTTGTGTACCATCACTGGGTTTGACTCCTTCTCTTTGCAACCTAATGCTGGTGCTGCTGGAGAATATGCTGGACTGATGGTTATCCGTGCATATCATTTGGCAAGAGGGGACCACCACCGAAATGTTTGCATTATACCTGTCTCTGCACATGGTACAAATCCTGCTAGTGCTGCTATGTGTGGAATGAAAATTGTATCTGTTGGAACTGATGCCAAGGGAAACATTAATATTGAAGAGTTGAGAAAGGCTGCTGAGACACACAGGGACAACTTATCTGCACTTATGGTAACATATCCTTCAACCCATGGTGTTTACGAAGAGGGCATTGATGAGATATGCAAGATTATTCATGATAATGGAGGCCAAGTATATATGGATGGTGCTAACATGAACGCACAGGTTTGTTTTTCTATGCTTACCTTTATGCTCATATATCTTAATGTGGGACTTACAAGCCCAGGTTGGATTGGAGCAGATGTTTGCCACCTGAATCTCCATAAGACATCTTGCATCCCTCATGGAGGAGGTGGCCCTGGCATGGGTCCTATTGGTGTAAAGAAACACTTGGCACCATTTTTACCTTCACATCCAGTGGTTCCTACTGGTGGCATTCCTGCCCCTGATAAGTCCCAGCCACTTGGTACCATTTCTGCTGCACCATGGGGATCAGCACTGATATTACCAATCTCTTACACTTACATAGCCATGATGGGTTCCAAAGGACTCACAGAAGCATCAAAGATAGCCATTTTGAATGCAAATTATATGGCAAAAAGATTAGAGAGTTATTACCCCGTTCTTTTCCGTGGAGTCAATGGAACAGTTGCTCACGAATTCATTATTGACTTAAGAGGCTTTAAGAATACTGCTGGGATAGAGCCTGAAGATGTTGCTAAGCGCCTTATGGACTATGGGTTTCATGGACCCACAATGTCATGGCCTGTGCCTGGCACACTCATGATTGAACCCACTGAAAGTGAAAGCAAGGCTGAGTTAGACAGGTTTTGTGATGCTCTTATTTCCATTCGAGAAGAAATTGCTGAGATTGAGAAAGGAAAGGCTGATATTAATAACAATGTACTTAAGGGAGCCCCTCATCCACCATCAGTACTGATGGGAGATGCATGGACAAAACCATACTCCCGGGAATATGCAGCCTACCCAGCTTCCTGGCTCCGTGTTTCTAAGTTCTGGCCTTCCACGGGACGTATTGATAATGTGTACGGTGATCGGAACCTAGTTTGCACTCTTCTCCCAGCATCACAGGTTGGTGAAGAACAAGCTGCTGCCACAGCCTAA 3168 0.4514 MERAARLANKAILKRLVREAKQLGQKGSLLNHSRCVSSVSRSVLRGRGSETENFVNRTKNLSRNVDSRSISVEALKPSDTFPRRHNSATPEEQSKMAQTCGFDNLDSLIDATVPKSIRLSEMKFSMFDEGLSESQMMEHMKHLESKNKCFKSYIGMGYYNTRVPPVILRNIMENPAWYTQYTPYQAEISQGRLQSLMNFQTMITDLTALPMSNASLLDEGTAAAEAMSMCNNIHKGKKKTFVIANNCHPQTIDICKTRAAGFDLEVVTVDVKDIDYKSGDVCGVLVQYPGTEGEVLDYGEFVKKAHAHGVKVVMATDLLALTVLKPPGELGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRMMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAERVHGLAGVFALGLKKLGTVEVQDLPFFDTVKIKTANAHAIADAALQSEINLRVVDGNTITVAFDETTTLEDVDKLFKVFAGGKPVSFTAASLAPEVQTALPSGLIRKSPYLTHPIFNTYHTEHELLRYIHRLQAKDLSLCHSMIPLGSCTMKLNATTEMMPVTWPSFSDIHPFAPVEQAQGYQEMFENLGKLLCTITGFDSFSLQPNAGAAGEYAGLMVIRAYHLARGDHHRNVCIIPVSAHGTNPASAAMCGMKIVSVGTDAKGNINIEELRKAAETHRDNLSALMVTYPSTHGVYEEGIDEICKIIHDNGGQVYMDGANMNAQVCFSMLTFMLIYLNVGLTSPGWIGADVCHLNLHKTSCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPAPDKSQPLGTISAAPWGSALILPISYTYIAMMGSKGLTEASKIAILNANYMAKRLESYYPVLFRGVNGTVAHEFIIDLRGFKNTAGIEPEDVAKRLMDYGFHGPTMSWPVPGTLMIEPTESESKAELDRFCDALISIREEIAEIEKGKADINNNVLKGAPHPPSVLMGDAWTKPYSREYAAYPASWLRVSKFWPSTGRIDNVYGDRNLVCTLLPASQVGEEQAAATA. 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01256 1055 Pfam Glycine cleavage system P-protein 84 510 IPR020581 GO:0004375|GO:0006546
Seca4g01256 1055 Coils Coil 700 720 - -
Seca4g01256 1055 FunFam Glycine cleavage system P protein 417 506 - -
Seca4g01256 1055 NCBIfam aminomethyl-transferring glycine dehydrogenase 84 1039 IPR003437 GO:0004375|GO:0006544
Seca4g01256 1055 SUPERFAMILY PLP-dependent transferases 84 510 IPR015424 -
Seca4g01256 1055 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 855 993 - -
Seca4g01256 1055 Hamap Glycine dehydrogenase (decarboxylating) [gcvP]. 75 1046 IPR003437 GO:0004375|GO:0006544
Seca4g01256 1055 SUPERFAMILY PLP-dependent transferases 545 1040 IPR015424 -
Seca4g01256 1055 MobiDBLite consensus disorder prediction 76 96 - -
Seca4g01256 1055 FunFam glycine dehydrogenase (Decarboxylating), mitochondrial 592 845 - -
Seca4g01256 1055 Gene3D Aspartate Aminotransferase, domain 1 858 994 IPR015422 GO:0003824
Seca4g01256 1055 PANTHER GLYCINE DEHYDROGENASE, DECARBOXYLATING 65 1046 IPR020581 GO:0004375|GO:0006546
Seca4g01256 1055 CDD GDC-P 553 962 IPR020581 GO:0004375|GO:0006546
Seca4g01256 1055 FunFam Glycine dehydrogenase (decarboxylating), mitochondrial 164 424 - -
Seca4g01256 1055 Gene3D - 164 424 IPR015421 GO:0003824
Seca4g01256 1055 Gene3D - 593 857 IPR015421 GO:0003824
Seca4g01256 1055 CDD GDC-P 133 510 IPR020581 GO:0004375|GO:0006546
Seca4g01256 1055 Gene3D Aspartate Aminotransferase, domain 1 153 506 IPR015422 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01256 Seca-Chr4 19916218 19924108 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01256 K00281 - gmx:100795673 1870.9
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01256 4 19916218 19924108 Seca4g01256 4 19916218 19924108 ECH
Seca4g01256 4 19916218 19924108 Seca4g01256 4 19916218 19924108 PCT