Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01243 ATGGAAACATCTGCAACACTATTACTACTGCTGGGGCTATTTACTTTTCTGCCAAACGCTCCATTTGGAATCAAAGCATCACCATACAGCATCAATTCTACCAACAACAGGACATCTGAAAAACAGCCTTATCGAACTTCTTACCACTTTCAACCCCCACAGAATTGGATGAACGAACATGGATATCTCTATCATGCAGATCCAAATGGACCAGTGTACTATAAAGGAGTTTATCACCTATTTTACCAATATAACCCTTATGCTGCAACCTTTGGTGATATCATGGTATGGGCTCACTCTGTGTCCTATGATCTCATCAATTGGATTCATCTGAACAATGCTATTGAACCAAGTGAGCCTTATGACATCAATAGCTGCTGGTCTGGCTCAGCCACAATCCTCCCAGATGGAAAACCTGTTATCATGTATACTGGAATTGCTGACAACAAACATCAAGTTCAGAATTTGGCTATGCCAAGGAATCTATCAGACATGTTTTTAAGGGAATGGGTCAAACACAGTCAAAACCCTGTCATAACTCCACCCAGTGGAGTTGAAGTGGACAATTTCAGAGACCCCTCAACTGCTTGGCAGGGAAGGGATGGAAAATGGAGAGTAATCATGGGTGCTCAAAACGGTGATGAAGGGAAGGCGATTCTCTACCAAAGTGAGGATTTTGTTAATTGGGAAGTTGACCCTAATCCATTTTATGCAACAGATAATACTGGAGTTTGTGAGTGCCCAGATTTCTTTCCAGTGTCCATCAATGGCACAAATGGGGTTGATACATCTGTCCAAAATCCTAGTGTTAGACATGTCATGAAAACAGGCTATCAAAGAAGAGCACATGACTACTATTTTGTGGGTAAATATCTCTCTGATCAGGATATCTTTGTTGCTGATACTAACTTTACAGGAACTAGTTTGGACTTAAGATATGACTATGGTAAATTTTATGCTTCCAAGTCATTTTTTGACTATGCCAAGAACAGGAGGATATTGTGGGGTTGGGTAAATGAATCAGACTCTGCACAAGATGATATTGAGAAAGGATGGGCTGGTGTGCAGTCCATTCCAAGACAAGTTTGGCTTGATAATAAAAGTGGGAAGCAATTGATACAGTGGCCAATTGAAGAAGTAAAAAAATTAAGGGGCAAGAAAATCAATATTAACGGAGAGAAACTCGGCAGTGGATCAATTCTTGAAGTTTCAGGTATCAGTGCCTCACAGGCTGATATAGAGGTAGTGTTTGAACTACCCGAAGTAGGAAGTGCAGAGTCTTTAGATGTTAGTGGGGTTGATCCCCAACTACTTTGTAGTGAAGAGTATGTATCAAGAAGTGGCATAATAGGGCCGTTTGGTTTATCAGCTTTAGCTTCTGAGGACCTAAGAGAACAGACTGCAATCTTCTTTCGGATATATAAATCTTCCAACAAATATATAGGCCTAATGTGCAGTGACCAGAGCAGGTCTTCACTTAGGAAGGATCTTGATAAAACGACATATGGAACTTTCTTTGATGTAGATCCCAATGTCAAGAGGATTTCACTCAGAAGCTTGATTGACCACTCCATTATTGAGAGTTTTGGGGAGGGAGGGAGAGTTTGTATCACCAGTAGAGTTTATCCCTCAATAGCTATTGGCAAAGAAGCCCATCTTTATGTATTTAACAATGGAACCCAGAGTGTCCTAATCTCAAATCTGAATGCTTGGAGCATGAAAAAAGCTGAGATTGGCCATCAGGAAAGTATAAGATTTAGCATGTAG 1767 0.4052 METSATLLLLLGLFTFLPNAPFGIKASPYSINSTNNRTSEKQPYRTSYHFQPPQNWMNEHGYLYHADPNGPVYYKGVYHLFYQYNPYAATFGDIMVWAHSVSYDLINWIHLNNAIEPSEPYDINSCWSGSATILPDGKPVIMYTGIADNKHQVQNLAMPRNLSDMFLREWVKHSQNPVITPPSGVEVDNFRDPSTAWQGRDGKWRVIMGAQNGDEGKAILYQSEDFVNWEVDPNPFYATDNTGVCECPDFFPVSINGTNGVDTSVQNPSVRHVMKTGYQRRAHDYYFVGKYLSDQDIFVADTNFTGTSLDLRYDYGKFYASKSFFDYAKNRRILWGWVNESDSAQDDIEKGWAGVQSIPRQVWLDNKSGKQLIQWPIEEVKKLRGKKININGEKLGSGSILEVSGISASQADIEVVFELPEVGSAESLDVSGVDPQLLCSEEYVSRSGIIGPFGLSALASEDLREQTAIFFRIYKSSNKYIGLMCSDQSRSSLRKDLDKTTYGTFFDVDPNVKRISLRSLIDHSIIESFGEGGRVCITSRVYPSIAIGKEAHLYVFNNGTQSVLISNLNAWSMKKAEIGHQESIRFSM. 589
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01243 588 FunFam Beta-fructofuranosidase, insoluble isoenzyme CWINV1 388 573 - -
Seca4g01243 588 CDD GH32_Fruct1-like 55 364 - -
Seca4g01243 588 Gene3D - 389 573 - -
Seca4g01243 588 SUPERFAMILY Arabinanase/levansucrase/invertase 40 377 IPR023296 -
Seca4g01243 588 SUPERFAMILY Concanavalin A-like lectins/glucanases 376 575 IPR013320 -
Seca4g01243 588 Gene3D Glycosyl hydrolase domain; family 43 54 388 IPR023296 -
Seca4g01243 588 SMART glyco_32 49 533 IPR001362 GO:0004553|GO:0005975
Seca4g01243 588 Pfam Glycosyl hydrolases family 32 C terminal 379 572 IPR013189 -
Seca4g01243 588 Pfam Glycosyl hydrolases family 32 N-terminal domain 49 376 IPR013148 -
Seca4g01243 588 PANTHER BETA-FRUCTOFURANOSIDASE, INSOLUBLE ISOENZYME CWINV1-RELATED 35 578 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01243 Seca-Chr4 19650069 19653152 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01243 65 578 Glycoside Hydrolase AT1G55120 55.725 0.0 605
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01243 K01193 - gmx:100777487 925.235
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01243 4 19650069 19653152 Seca4g01243 4 19650069 19653152 ECH