Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01233 ATGTATGGTATTGTTAACCTATGCTTATATGGTGGTTTTAGAGGAAATGGAGCTAGTGTTATCCGGATTGTTCCATATGCAGCCTTGCATTTTATGACATATGAGCGGTATAAAAGTTGGATCTTGAATAATTGTCCTATGTTAGGAACGGGTCCTTCTATTGATCTTTTAGCTGGCTCTGCAGCAGGAGGAACTTCAGTTTTATGTACATATCCCTTGGATCTTGCCCGTACCAAACTTGCATACCAGGTGGCTGACACAAGAGGAAGTATCAAAGATGGTATGAAAGGAGTTCATTCCCTACCTGCACATAATGGGATTAAAGGTGTACTGACAAGTGTCTATAAGGAAGGGGGAGTTCGTGGACTTTATAGGGGTGCAGGACCAACCCTTACTGGAATTCTTCCATATGCTGGTCTAAAGTTCTACATGTATGAGAAATTAAAGATGCATGTTCCTGAAGAACATCAAAAGTCCATTTTGATGCGCCTTGCATGTGGAGCTCTAGCTGGATTGTTTGGGCAGACTTTAACATACCCTCTAGATGTTGTTAAGAGACAGATGCAGGTTGGCAGCCTGCAAAATGCAGCTCATGAAGATGCCAGATATAGAAACACATTGGATGGACTTAGGACGATTGCTCGTAATCAAGGGTGGAGGCAGTTGTTTGCAGGCGTAAGCATTAACTATATAAGGATTGTTCCTTCAGCTGCAATTAGTTTCACCACATATGACATGATGAAGGCTTGGCTTGGCATACCACCCCAACAGAAGTCTCAATCAGTTTCGGCAGCATAA 798 0.4248 MYGIVNLCLYGGFRGNGASVIRIVPYAALHFMTYERYKSWILNNCPMLGTGPSIDLLAGSAAGGTSVLCTYPLDLARTKLAYQVADTRGSIKDGMKGVHSLPAHNGIKGVLTSVYKEGGVRGLYRGAGPTLTGILPYAGLKFYMYEKLKMHVPEEHQKSILMRLACGALAGLFGQTLTYPLDVVKRQMQVGSLQNAAHEDARYRNTLDGLRTIARNQGWRQLFAGVSINYIRIVPSAAISFTTYDMMKAWLGIPPQQKSQSVSAA. 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01233 265 PANTHER SOLUTE CARRIER FAMILY 25 11 253 - -
Seca4g01233 265 ProSiteProfiles Solute carrier (Solcar) repeat profile. 50 151 IPR018108 -
Seca4g01233 265 Pfam Mitochondrial carrier protein 54 152 IPR018108 -
Seca4g01233 265 Pfam Mitochondrial carrier protein 158 251 IPR018108 -
Seca4g01233 265 Pfam Mitochondrial carrier protein 11 43 IPR018108 -
Seca4g01233 265 SUPERFAMILY Mitochondrial carrier 11 246 IPR023395 -
Seca4g01233 265 ProSiteProfiles Solute carrier (Solcar) repeat profile. 158 250 IPR018108 -
Seca4g01233 265 Gene3D Mitochondrial carrier domain 8 252 IPR023395 -
Seca4g01233 265 PRINTS Mitochondrial carrier protein signature 15 35 IPR002067 GO:0055085
Seca4g01233 265 PRINTS Mitochondrial carrier protein signature 167 189 IPR002067 GO:0055085
Seca4g01233 265 PRINTS Mitochondrial carrier protein signature 124 142 IPR002067 GO:0055085
Seca4g01233 265 PRINTS Mitochondrial carrier protein signature 65 83 IPR002067 GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01233 Seca-Chr4 19529382 19532158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01233 32 260 Organic Solute Cotransporters AT1G14560 67.965 1.01e-115 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01233 - - gmx:100784421 470.314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01233 4 19529382 19532158 Seca4g01233 4 19529382 19532158 ECH