Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01228 ATGGAGGAAAGCTATCCCAGAAGCAAGTTCAAGAGGGTCTGTGTCTTCTGTGGCAGCAACTCTGGCAACCGAAAAGTCTTCAGTGACGCTGCGATTCAATTGGGCAATGAACTCTGTGAATTACAGGTTAAGCGGAACATAGACTTGGTGTATGGTGGAGGAAGTGTTGGACTGATGGGTTTAATATCCCAGAGAGTGTATGATGGAGGCTGCCATGTCCTAGGGTATATGCATAAAAACACTTGCTTTTTAGAGATATCTGGTGAAACAGTAGGTGAAGTAAGAATTGTTTCAGATATGCATGAGAGGAAAGCTGCAATGGCTCATGAAGCTGATGCATTTGTTGCTCTCCCTGGAGGATATGGAACCATGGAAGAGCTTTTGGAGATGATAACTTGGGCCCAACTTGGAATTCATAAGAAACCGGTTGGTCTATTGAATGTTGATGGCTACTATAACTGTTTGCTTGCATTGTTTGACAATGGTGTTCAAGAAGGATTCATTAAGCCCTGTGCACGGAATATAGTGGTCTCTGCCCCATCTGCCAAAGAACTTATGATGAAGATGGAGCATTACAGTCCATCGCATGAAGATGTCGCCCCTCATGAGAGCTGGCAGATGAAGCAATTAGGTAATTACCAAGGACAAGAAAATGCAGAGTGA 663 0.4389 MEESYPRSKFKRVCVFCGSNSGNRKVFSDAAIQLGNELCELQVKRNIDLVYGGGSVGLMGLISQRVYDGGCHVLGYMHKNTCFLEISGETVGEVRIVSDMHERKAAMAHEADAFVALPGGYGTMEELLEMITWAQLGIHKKPVGLLNVDGYYNCLLALFDNGVQEGFIKPCARNIVVSAPSAKELMMKMEHYSPSHEDVAPHESWQMKQLGNYQGQENAE. 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01228 220 SUPERFAMILY MCP/YpsA-like 9 192 - -
Seca4g01228 220 PANTHER LOG FAMILY PROTEIN YJL055W 6 216 - -
Seca4g01228 220 FunFam Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG8 10 208 - -
Seca4g01228 220 NCBIfam Rossman fold protein, TIGR00730 family 11 192 IPR005269 GO:0009691|GO:0016787
Seca4g01228 220 Gene3D - 9 208 - -
Seca4g01228 220 Pfam Possible lysine decarboxylase 59 189 IPR031100 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01228 Seca-Chr4 19492338 19495385 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01228 K22522 - gmx:100785484 387.111
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01228 4 19492338 19495385 Seca4g01228 4 19492338 19495385 PCT