Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01205 ATGGATTTGAGGTGGTTAGGAGTGGATCCTCGTCTCGTGGATCTCCTGCTCAACCACGTAGACTTTCCGGATGAAACGGACACCAAGTCGCACCATGCGCCGTCTCGGGCCTACGTTCGAGACTCAAAGGCGATGGCGAGCACGCACGCTGACATACTTGAATACCCTGACTCATACAAGTTCGTGGTGGACATGCCGGGCCTCAAGTCTGACCAGATAAAAGTCAACATGGAAGATAACACGCTGGTGGTGAGTGGAGAGAGGAAGAGAGACAAGGACAAGGACCACAAAGAAGGAGTCAAGTACCTTCGGATGGAGAGGAAGCAAGGCAAGTTCCTGAAGAAGTTCGAGCTCCCTGAAAATGCCAATTGTGATGAAATTTGTGCCTGTTATCAGGATGGAGTGCTCACTGTCACTGTCCATAAGAAGCCACCTCCGGAGCCCAAGAAGCCCAAGACCATTCAGTTCCTACGCAAGAGAAGAGGGGAAAAGGCAATGGATTTCAGGTTGATGGGTTTGGACTCTCCATTGCTGAACACACTGCACCAAATAATGGATCTCACAGATGACTCTGGCGAGAAGAACTTGAATGCCCCAACCAGGACATATGTCCGTGATGCAAAGGCAATGGCTGCCACCCCTGCAGACGTGAAGGAGTACCCCAACTCATACGTGTTCGTGATCGACATGCCTGGGTTGAAGTCTGGGGACATCAAAGTTCAGGTGGAAGACGACAATGTGCTTCTCATATGTGGTGAGAGGAAGAGGGAGGAAGAAAAAGAAGGGGCTAAATATTTGAGGATGGAGAGAAGGGTTGGTAAATTCATGCGCAAGTTTGTGCTCCCTGAAAATGCCAATACTGACGCCATATCTGCTATCTGCCAAGATGGTGTGCTCACTGTCACTGTAAACAAGTTGCCTCCTCCTCAGCCTAAGAAGCCCAAAACTATTGAGGTTAAGATTGTTTGA 969 0.4943 MDLRWLGVDPRLVDLLLNHVDFPDETDTKSHHAPSRAYVRDSKAMASTHADILEYPDSYKFVVDMPGLKSDQIKVNMEDNTLVVSGERKRDKDKDHKEGVKYLRMERKQGKFLKKFELPENANCDEICACYQDGVLTVTVHKKPPPEPKKPKTIQFLRKRRGEKAMDFRLMGLDSPLLNTLHQIMDLTDDSGEKNLNAPTRTYVRDAKAMAATPADVKEYPNSYVFVIDMPGLKSGDIKVQVEDDNVLLICGERKREEEKEGAKYLRMERRVGKFMRKFVLPENANTDAISAICQDGVLTVTVNKLPPPQPKKPKTIEVKIV. 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01205 322 PANTHER HEAT-SHOCK PROTEIN 20 FAMILY MEMBER 178 320 IPR031107 -
Seca4g01205 322 Pfam Hsp20/alpha crystallin family 216 320 IPR002068 -
Seca4g01205 322 Pfam Hsp20/alpha crystallin family 51 155 IPR002068 -
Seca4g01205 322 SUPERFAMILY HSP20-like chaperones 32 151 IPR008978 -
Seca4g01205 322 Gene3D - 175 321 IPR008978 -
Seca4g01205 322 Gene3D - 18 156 IPR008978 -
Seca4g01205 322 FunFam 17.3 kDa class II heat shock protein-like 11 157 - -
Seca4g01205 322 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 41 157 IPR002068 -
Seca4g01205 322 FunFam 17.3 kDa class II heat shock protein-like 176 321 - -
Seca4g01205 322 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 206 320 IPR002068 -
Seca4g01205 322 SUPERFAMILY HSP20-like chaperones 197 314 IPR008978 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01205 Seca-Chr4 19210680 19214933 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01205 K13993 - gmx:111605749 262.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01205 4 19210680 19214933 Seca4g01205 4 19210680 19214933 ECH