Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01197 ATGGCTCTGGCATTTCGGAAAGCCACAGTGAAACCTTCTTCTGTTCCAAACCCCTCACTCGTAACATCTATTACCTCCCTCCTTGAAACCCTAAATCCCCAAAGCCCAGAGTGTGAACCCCTTAAAAACCTTTCACCTCACCTCACTCCAAGCTTGGTTATCCAAGTCATTAAGAATGTAAAGAATCCCCATCATGCTCTCTATTTCTTCAACTGGGCTTCCAATCCAGAACCCAACCACAACAACTATTCTCACACTTTTTCCTGTTACGCTGCCATCACCGATGTCTTGCTTTCTCATTCTCTTTTCTCCACTGCCCACTCCCTCCTTCGCCACTATAACAAACTCTCCGATTTCCTCATCTCCAAATTCATCAACGCTTTGGGTGATCGCGGTGATATCAGGGGTGCCATTCATTGGTTCCACAAAGCCAAAACCTTTGCTAGAGGAAGCTATGTCTTTTCCTGTAACGCCATATTGGGTGTGTTGGTGAAAGCAAACCGGGTTAATCTAGCCAAGGCTATCTATGATCAGGTTGTTGCAGAAGCTGTGGTGAAACCAGATGTTTTCACTTATACCACTATGATTAGGGGCTTCTGCAAAATGGGCATGGTCGAGAATGCGAGAAAGGTGTTCGATGAAATGCACTGTGAACCCAACGCCATTACTTTCAACACAATGATCCACGGGTTATGCAAGAATGGTGATATGGAAGGTGCCAAGAGGGTTTTTAATCGATTGGTGGGAAGTAATAGTTGCAAACCAGATGTGGTGACTTTTTCTACTTTGATTGATGGGTATTCCAAGAAAGGTGAATTTGAAGAGGCACTGAACTACCTGAAGGAGATGCTGGAACAAGGTTGTCGCCCCAATGTTGTGACTTATAATGCATTGATTGAAGGTCTTTCTTTGAACGGGAATGTGGATGAGGCCAAGAGGATGATGACTAGGATGCGGTTAAATGGTTTGAAAGACAATGTTGCCACTAACACTAGCATATTGAAGGGTTTTTGCATTGTGGGAAAGTCTGATGAAGCTATCAAGCACATGAAGGAAATGATTAGTCGTGGAATGAATCCAGATGTGAAAGCATACAGTATCATTGTCAATGAGTATTGCAAAATTAGAAAACCAAAGGAAGCAGTTTCACTTTTAAGGGAAATGGTAGCTAGGGGGATTAAGCCAAGTGTGTCAAGTTTCAATGCAGTGTATAGAGTTCTTGTGGCTGAGTGGAAGCTTGATGAAGTAGTTCTTCTTTTAAAGCAGATGCCTCAATTGGGTTGCAATCCCAACTTCTTGTCATATAGCATAGTGATATGTGGTCTTTGTAAAGTGAAGGGTAGGATGCAACAAGTTGAAGAGCTTGTTGGGGACATGCTACAGAATGGACATAACCTGGATGCCACTATGTACAACTGCATACTTGAGGGGTACTGTGAACATGGGGATGAAGAAATGGCATTGAAGACAGTTTATGACATAATTGATAAGAACTTTGTAATCAACAAAGACACTTTCTACGCTTTTGTCAAAGAGTTGTGTGCAAAAGGGAGAGTTAAAGAGGTGGAGACAGTGTTTGAAGAGATGTACAAGAAATGCCCTGTGTCTGATATAAATGCTTACAGATTGGTGCTATGCCAGTTGTGTGGGAAAGCTGAAGCAACTGAGGAACGTTGA 1677 0.4264 MALAFRKATVKPSSVPNPSLVTSITSLLETLNPQSPECEPLKNLSPHLTPSLVIQVIKNVKNPHHALYFFNWASNPEPNHNNYSHTFSCYAAITDVLLSHSLFSTAHSLLRHYNKLSDFLISKFINALGDRGDIRGAIHWFHKAKTFARGSYVFSCNAILGVLVKANRVNLAKAIYDQVVAEAVVKPDVFTYTTMIRGFCKMGMVENARKVFDEMHCEPNAITFNTMIHGLCKNGDMEGAKRVFNRLVGSNSCKPDVVTFSTLIDGYSKKGEFEEALNYLKEMLEQGCRPNVVTYNALIEGLSLNGNVDEAKRMMTRMRLNGLKDNVATNTSILKGFCIVGKSDEAIKHMKEMISRGMNPDVKAYSIIVNEYCKIRKPKEAVSLLREMVARGIKPSVSSFNAVYRVLVAEWKLDEVVLLLKQMPQLGCNPNFLSYSIVICGLCKVKGRMQQVEELVGDMLQNGHNLDATMYNCILEGYCEHGDEEMALKTVYDIIDKNFVINKDTFYAFVKELCAKGRVKEVETVFEEMYKKCPVSDINAYRLVLCQLCGKAEATEER. 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 467 501 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 220 255 IPR002885 -
Seca4g01197 558 Gene3D Tetratricopeptide repeat domain 286 373 IPR011990 GO:0005515
Seca4g01197 558 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 3, MITOCHONDRIAL 33 357 - -
Seca4g01197 558 Gene3D Tetratricopeptide repeat domain 38 215 IPR011990 GO:0005515
Seca4g01197 558 Gene3D Tetratricopeptide repeat domain 216 285 IPR011990 GO:0005515
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 396 430 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 222 257 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 293 323 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 331 362 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 470 502 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 258 292 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 190 219 IPR002885 -
Seca4g01197 558 NCBIfam pentatricopeptide repeat 364 397 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 188 218 IPR002885 -
Seca4g01197 558 Gene3D Tetratricopeptide repeat domain 374 558 IPR011990 GO:0005515
Seca4g01197 558 Pfam PPR repeat family 255 302 IPR002885 -
Seca4g01197 558 Pfam PPR repeat family 326 374 IPR002885 -
Seca4g01197 558 Pfam PPR repeat family 395 444 IPR002885 -
Seca4g01197 558 Pfam PPR repeat family 187 232 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 291 325 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 256 290 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 431 466 IPR002885 -
Seca4g01197 558 Pfam PPR repeat 508 531 IPR002885 -
Seca4g01197 558 Pfam PPR repeat 470 498 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 326 360 IPR002885 -
Seca4g01197 558 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 361 395 IPR002885 -
Seca4g01197 558 SUPERFAMILY HCP-like 125 318 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01197 Seca-Chr4 19156383 19158059 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01197 179 556 Glycosyltransferase AT1G05670 22.843 3.50e-26 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01197 - - aprc:113866240 880.167
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01197 4 19156383 19158059 Seca4g01197 4 19156383 19158059 ECH