Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01183 ATGGCTTCTGCTTCTGTTGCAATGGCTTTGCCACTGAGCTCTGCTACCCAAAACAGGTTGAACAAGCCATCTTCTGAAGCCTTTTTCAACCCATTACCCCTGCGACAATCAAAGAGGACCCTCTTTACAAAGCCACAGTCAAAATCCAAGCTTGGAATTAATGCATCTTTGAAGGAAAAGGCACTGACAGGTATTACAGCCGCTTCCTTGACAGCCTCCATGGTGATACCAGAGGTGGCTCAAGCAGCTGGATCTGATCTCACCCCATCTCTCAAGAACTTTCTACTCAGCATTTTTGCTGGTGGGGTTGTGCTAGCAGCCTTACTTGGAGCCGTTATTGGGGTTTCCAACTTTGATCCAGTTAAGAGAACTTGA 375 0.4693 MASASVAMALPLSSATQNRLNKPSSEAFFNPLPLRQSKRTLFTKPQSKSKLGINASLKEKALTGITAASLTASMVIPEVAQAAGSDLTPSLKNFLLSIFAGGVVLAALLGAVIGVSNFDPVKRT. 125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01183 124 Gene3D Single helix bin 86 124 - -
Seca4g01183 124 PANTHER OS07G0673550 PROTEIN 1 124 - -
Seca4g01183 124 Pfam Photosystem II reaction centre X protein (PsbX) 88 123 IPR009518 GO:0009523|GO:0015979|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01183 Seca-Chr4 18914148 18914522 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01183 - - gmx:100305487 167.933
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01183 4 18914148 18914522 Seca4g01183 4 18914148 18914522 ECH