Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01168 ATGGAAAATTTACAGAGGCTGTCTGATGCTAATTATGTTCCTACAAAGGAGGATGTCTTATATGCAAGAGTTCGTACAACTGGAGTTGTTGAGATCCAGTTCAGCCCTGTTGGAGAAAATAAGAGAAGTGGTGAAGTCTATAGACTCTTTGATGTTGGTGGCCAGAGAAATGAGAGGAGAAAATGGATCCATCTTTTTGAAGGAGTTACAGCTGTAATATTCTGTGCTGCAATTAGCGAGTATGATCAGACACTTTTTGAGGATGAAAACAAGAACAGAATGATGGAAACTAAGGAACTTTTTGAGTGGGTCCTGAAGCAACCATGTTTTGAGAAAACATCCTTCATGTTATTTTTAAACAAGTTTGACATATTCGAGAAGAAGATCTTGAAAGTCCCGCTTAACGTATGTAAGTGGTTCAAAGATTACCAACCAGTTTCAACAGGGAAACAAGAGATTGAGCATGCATATGAGTTTGTGAAGAAAAAATTTGAGGAATTGTATTTCCAAAACACTGCTCCGGACCGTGTAGATCGTGTCTTCAAGATCTACCGGACCACTGCCCTAATGGATACTAAAAGAGTACATTGGGCCATTATGATAGTATGGCTCACTTTGTTTGAAGGAAATATGATGCATGTTAATGGTGATCTTAATTATAAGGAGGCTCTCACCAAGTCCCTTATCTTCCTAGAAGCACAAAGATCAGGGAAGCTCCCTTCCAATAACAGGGTGCCATGGAGAGGAGACTCAGGACTAGATGATGGCAAACTTGTTAATGTGGACCTTGTTGGAGGATACTATGATGCAGGGGATAATGTCAAGTATGGACTCCCTATGGCTTTTACAGTTACTACCCTTTCATGGGCTGCTATGTTTTACAAGTCAGAATTTAAAGCTGCAAACGAATTGGAAAATATTCGTGATGCCATTAAATGGGGTACTGATTATTTTCTGAAAGTTGGGGACCCAGAAGAGGATCACAATTGTTGGGCTCCACCAGAAAAAATGAAGACAAAAAGAAGGGTTTTGAAGGTTGATAGTAACTCGCCAGGGACTGAGATTGCAGCTGAAACTTCAGCAGCAATGGCTGCTTCTTCTATTGTTTTTAGATCCGTAGATCGTAAATATGCTCGTCGTCTCCTCAACAAGGCCAAATTGCTTTTCCAATTGGCAAAATCGCATAAGGGAACCTATGATGGAGAGTGTCCCTTCTACTGCTCCTATTCAGGCTATAATGATGAAATGATGTGGGCAGCAACATGGCTATACTTGGCTACGAGGAAGTCTATGTATTTGAAGTATGTCCAAGAAGAATCCATAAGTGCTAGTGTATCAGAATTTAATGTTGTTGCTCAGTTACATTTTGAAGGTCAAAAGAATCTAGAAACATTCAAAAGCCATGCCGAAAGTTTTGTATGCTCAGTCCTTCCTAATAGTCCCTACCACCAAATCAACTTGTCTCCAGGTGGGTTCATTCATTTGAGAGATGGAGCAAACACGCAATATGCCACTGGCACATCTTTCTTGCTCTCTGTATATAGTGATTTGCTTGCCAAGCATAACGAGAAAGTCATTTGTGGAGACAAAAAATTTGATTCATCCCACCTCCTTTCTTTTGCTAAGAAACAGATGGATTACATACTTGGGAAAAACCCAGAAGGAAGATCATACATGGTTGGATTTGGGAAAAACCCACCAAAGCAAGCTCACCATAGAGGTGCTTCAGTGCCAAAGTTACCGGAGAACGAAGAGGTGAACTGTCCCTTGAGCTTTGTGAAATGGTTTCTTAAAGATGAAGCAAACCCCCATGAGCTCACTGGTGCCATTGTGGGTGGACCTGACCGCCACGATAAGTTCAATGATAAACGTTGGGATTCACCCAAAACTGAACCATGCACATATGTCAATTCCCTAGCAGCTGGAGCTCTTGCAAAACTTGCCTCTTTGGGTTAA 1956 0.411 MENLQRLSDANYVPTKEDVLYARVRTTGVVEIQFSPVGENKRSGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDENKNRMMETKELFEWVLKQPCFEKTSFMLFLNKFDIFEKKILKVPLNVCKWFKDYQPVSTGKQEIEHAYEFVKKKFEELYFQNTAPDRVDRVFKIYRTTALMDTKRVHWAIMIVWLTLFEGNMMHVNGDLNYKEALTKSLIFLEAQRSGKLPSNNRVPWRGDSGLDDGKLVNVDLVGGYYDAGDNVKYGLPMAFTVTTLSWAAMFYKSEFKAANELENIRDAIKWGTDYFLKVGDPEEDHNCWAPPEKMKTKRRVLKVDSNSPGTEIAAETSAAMAASSIVFRSVDRKYARRLLNKAKLLFQLAKSHKGTYDGECPFYCSYSGYNDEMMWAATWLYLATRKSMYLKYVQEESISASVSEFNVVAQLHFEGQKNLETFKSHAESFVCSVLPNSPYHQINLSPGGFIHLRDGANTQYATGTSFLLSVYSDLLAKHNEKVICGDKKFDSSHLLSFAKKQMDYILGKNPEGRSYMVGFGKNPPKQAHHRGASVPKLPENEEVNCPLSFVKWFLKDEANPHELTGAIVGGPDRHDKFNDKRWDSPKTEPCTYVNSLAAGALAKLASLG. 652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01168 651 Gene3D - 216 651 IPR012341 GO:0005975
Seca4g01168 651 ProSitePatterns Glycosyl hydrolases family 9 (GH9) active site signature 2. 547 573 IPR018221 -
Seca4g01168 651 PRINTS Alpha G protein (transducin) signature 12 34 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 PRINTS Alpha G protein (transducin) signature 47 64 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 PRINTS Alpha G protein (transducin) signature 115 124 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 PRINTS Alpha G protein (transducin) signature 69 97 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 PANTHER ENDO-1,4-BETA-GLUCANASE 208 648 - -
Seca4g01168 651 CDD G-alpha 1 206 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 SUPERFAMILY Six-hairpin glycosidases 218 648 IPR008928 GO:0005975
Seca4g01168 651 ProSiteProfiles G-alpha domain profile. 1 217 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 Pfam Glycosyl hydrolase family 9 220 644 IPR001701 GO:0004553|GO:0005975
Seca4g01168 651 SUPERFAMILY Transducin (alpha subunit), insertion domain 1 26 IPR011025 GO:0007165
Seca4g01168 651 Gene3D - 13 215 IPR027417 -
Seca4g01168 651 FunFam Guanine nucleotide-binding protein alpha-1 subunit 11 202 - -
Seca4g01168 651 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 19 190 IPR027417 -
Seca4g01168 651 SMART galpha_1 1 216 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 PRINTS Plant G protein alpha subunit signature 102 113 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Seca4g01168 651 PRINTS Plant G protein alpha subunit signature 32 47 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Seca4g01168 651 PRINTS Plant G protein alpha subunit signature 151 166 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Seca4g01168 651 PRINTS Plant G protein alpha subunit signature 168 180 IPR002976 GO:0001664|GO:0003924|GO:0005834|GO:0007188|GO:0031683
Seca4g01168 651 Pfam G-protein alpha subunit 2 197 IPR001019 GO:0003924|GO:0007186|GO:0019001|GO:0031683
Seca4g01168 651 FunFam Endoglucanase 216 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01168 Seca-Chr4 18697187 18707560 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01168 210 649 Glycoside Hydrolase AT3G43860 67.749 0.0 644
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01168 K01179 - gmx:100811509 778.859
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01168 4 18697187 18707560 Seca4g01168 4 18697187 18707560 ECH