Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01143 ATGAGCTCCACAACCACAATCAGTTTGGAAATGGATCGCACTCAGCTCGACGACGACGATGATTTTGAGATCCCTCTCACCCAGACAACAACAACAACAACATTTCACGCCCTCACCCCCTCCAACAAACACAATCACCGCCCATCCAAGAAACCCAAACACAAAACGACCACGTTCTGCGGCATTGGCAAGGAGAACCTCCCCCCTAATGCGCTCTCTCCTACTCACAGCGACGGTTACGAAATTGACAACTGCAGTTTGGATTTCATTCCTTCCACCATAGATTATGTTGCCAACAACACTCAAACTGTTTCTGCATCTGCATCTGCATCTGCGTCCACCTCCACGTCGGAGCTGAAAACGAAGAAGGGGACTTATTTGCGCAACTCAATAGAGTCTAAGCTTGTGGTGTCGAGAACAAACGCATTTAACTATACAGAGGCTGATTCGGAGCTGATTTCGTGTGATGAGTTAGACCAAGTAGTAGATAGCTCCGTCCAATGTCCCCTATGCGGAGATGATATTTCCAATTTGAATGAGGAACAGCGACATCTTCATACCAACCATTGTCTTGACAAAGGAGATGATGTTGCCCTTCCTGATGACCAGATTGGGGCTCAATCTGTGTCAAAAGTCTCTCCTGTCATTGAATGGCTTCGTGATCTAGGTTTGGCAAAATATGAAGATGTTTTCATTAGGGAAGAAGTAGATTGGGATACCTTGCAATGGCTAACAGAAGAGGATCTCTTAAGCATGGGTATCACTGCACTTGGCCCCAGAAAAAAGATTGTACATGCCTTGTGCGAACTTAGAAAGGGACCTGCCCCTTCTAACGAGAAACATGAGGATGTAGCAGAGCCTAGAAGGATTAGAAACCAGAAAGTCAAATTGCAGCATGACAAATCTGAAAGAAAAGTTGATGGCACTAGCAAACCAGCCTCAAACAAATTAATTACTGAATATTTTCCGGGATTTGCTACCAATGGGAAGAAAGTTTCCACCTCTTCTGGAGAACAACATGAAATTAAAAAAAGTGGCCCTGTTTCTGGTTGTAAGAATAAAGCAAAAAATATCTCAACAAATAGAAAGCTTCGTGATGTTCCCAAATGGTGTAGCATAGAAGGAACACCTTTCCGGGTGGATGCTTTCAAATATCTCAGAGGAGATTGTTCCCACTGGTTTCTAACACACTTCCACTTGGACCATTATCAAGGTCTCACCAAGTCGTTCAATCATGGAAAGATCTATTGCTCCTCTGTTACAGCTAGACTCGTAAATATGAACATTGGGATTCCATATGATAAAATACACGTTTTGCCTTTGAACCAAAAGGTTGAAATAGCTGGTATTAATGTGACTTGCTTGGATGCCAACCACTGTCCAGGTTCCATAATCATACTCTTTCAACCTCCAAATGGTAAGGTGTGGCTTGGATAG 1437 0.4342 MSSTTTISLEMDRTQLDDDDDFEIPLTQTTTTTTFHALTPSNKHNHRPSKKPKHKTTTFCGIGKENLPPNALSPTHSDGYEIDNCSLDFIPSTIDYVANNTQTVSASASASASTSTSELKTKKGTYLRNSIESKLVVSRTNAFNYTEADSELISCDELDQVVDSSVQCPLCGDDISNLNEEQRHLHTNHCLDKGDDVALPDDQIGAQSVSKVSPVIEWLRDLGLAKYEDVFIREEVDWDTLQWLTEEDLLSMGITALGPRKKIVHALCELRKGPAPSNEKHEDVAEPRRIRNQKVKLQHDKSERKVDGTSKPASNKLITEYFPGFATNGKKVSTSSGEQHEIKKSGPVSGCKNKAKNISTNRKLRDVPKWCSIEGTPFRVDAFKYLRGDCSHWFLTHFHLDHYQGLTKSFNHGKIYCSSVTARLVNMNIGIPYDKIHVLPLNQKVEIAGINVTCLDANHCPGSIIILFQPPNGKVWLG. 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01143 478 CDD SAM_superfamily 215 267 - -
Seca4g01143 478 MobiDBLite consensus disorder prediction 37 56 - -
Seca4g01143 478 MobiDBLite consensus disorder prediction 274 310 - -
Seca4g01143 478 FunFam Sterile alpha motif (SAM) domain-containing protein 208 283 - -
Seca4g01143 478 ProSiteProfiles SAM domain profile. 210 273 IPR001660 GO:0005515
Seca4g01143 478 Gene3D - 207 282 IPR013761 -
Seca4g01143 478 CDD SNM1A-1C-like_MBL-fold 359 477 - -
Seca4g01143 478 SUPERFAMILY Metallo-hydrolase/oxidoreductase 377 475 IPR036866 -
Seca4g01143 478 MobiDBLite consensus disorder prediction 274 311 - -
Seca4g01143 478 Pfam SAM domain (Sterile alpha motif) 210 269 IPR001660 GO:0005515
Seca4g01143 478 PANTHER DNA CROSS-LINK REPAIR PROTEIN PSO2/SNM1-RELATED 362 476 - -
Seca4g01143 478 Gene3D - 373 475 IPR036866 -
Seca4g01143 478 SMART SAM_4 207 273 IPR001660 GO:0005515
Seca4g01143 478 SUPERFAMILY SAM/Pointed domain 211 272 IPR013761 -
Seca4g01143 478 ProSitePatterns Zinc finger C2H2 type domain signature. 168 189 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01143 Seca-Chr4 18336554 18339789 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01143 213 267 Glycosyltransferase AT3G07170 49.091 2.22e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01143 K15340 - gmx:100816321 620.928
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01143 4 18336554 18339789 Seca4g01143 4 18336554 18339789 ECH