Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01130 ATGGATAATGATCAGCATGGCCAAAGTGTAAGTTTGAAGAGAAAGTCACCAGGAGATGGAGACCATTTACTCTTCAACAGTTTTTCTATGGATGACCTTAATGATGATCTCTTTGAAGGGATACTTTCATGGCTGCCAACTTCCACATTCTTTCGCCTTACTTCTGTGTGCAAGAGATGGAAATCAGTTGCTGCTTCTACCAGTTTCAAGCTTGCATGCTCTCACATTCCTTCAAGGGATCCTTGGTTTTTAATGGTTGCTCCCAACCTCAACCAATCTGTTATCTTTGACTCTGCTGAAAGCACTTGGAAAAGAATCAATCACCCTCCTCTACTGCATGAAGAATCTAACCAAAGTTGCATGCCAGTTGCAGCCTCTGGTGGCTTGATTTGCTACAGGAAATTATCAGGAAACTTCATTGTAAGCAATCCTGTGACAGGATCTTGTAGTGAACTCCCTCCACTTCAATTTTCCCCACAAGATCAACCTCTTAATGCCATTGTGATGAGCACAACTTCCAAAGACCAACTCTCCTTCAAAGTTGTGTTAGTCTTTGGTGAACTTCCAAATCTTTTGTTTAAAGTCTACAATTCAAGCTCTGGCTGTTGGGAAGGTGAAACTGCACTAAGGAGAAAGGTTGATGATAATTCCATGGTATATGACTCAACTGATGACAATGTTGTGTACTTCCTAAACAAAGCTGGAATTGTGGTAGCAAGCAACATGCAGAGAAGCCCATCTAAGCAATATTCATCAGTTATTACTAACAAAAATGGTCAAGAGATTGTTTACTTTCTTAGCTCCTCAGGGACAGTAGTAGCTTGCAATTTGACATGCAAGTGCTTCTTTGAGTACCCCAGGTTATTGCCAGTTTTCAGTGAGTATTCCATTGATGTTGTGGAGTGTAATGGAGAGGTGCTAATTGTTTTGTTATCAGAATTCTTGGAAACTGCAAGTCTTAGGGTGTGGAAATATGATGAAGCTAATAGAGGCTGGCAACAGATTGCAGCAATGCCTGCAGCTAATTCACATGAGTTGTATGGGAAGAAGGCAGATATTAACTGTGTTGGGGCTGGTAACCAGATCTTTGTATGCTTGAACTCCCCTGAACTATGTACTTACATTTTGTGTGATTTGGAGACCAACAAGTGGGTTGAATTGCCAAAATGTTGCATAAATGGTGAAGTCATAGACTTCATGTCTGCCTTTTCATTTGAGCCTAGGATAGAGGCTTCTGTGTGA 1242 0.4098 MDNDQHGQSVSLKRKSPGDGDHLLFNSFSMDDLNDDLFEGILSWLPTSTFFRLTSVCKRWKSVAASTSFKLACSHIPSRDPWFLMVAPNLNQSVIFDSAESTWKRINHPPLLHEESNQSCMPVAASGGLICYRKLSGNFIVSNPVTGSCSELPPLQFSPQDQPLNAIVMSTTSKDQLSFKVVLVFGELPNLLFKVYNSSSGCWEGETALRRKVDDNSMVYDSTDDNVVYFLNKAGIVVASNMQRSPSKQYSSVITNKNGQEIVYFLSSSGTVVACNLTCKCFFEYPRLLPVFSEYSIDVVECNGEVLIVLLSEFLETASLRVWKYDEANRGWQQIAAMPAANSHELYGKKADINCVGAGNQIFVCLNSPELCTYILCDLETNKWVELPKCCINGEVIDFMSAFSFEPRIEASV. 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01130 413 SMART fbox_2 33 73 IPR001810 GO:0005515
Seca4g01130 413 CDD F-box_AtFBW1-like 31 69 - -
Seca4g01130 413 SUPERFAMILY Galactose oxidase, central domain 93 388 IPR011043 -
Seca4g01130 413 Gene3D - 25 70 - -
Seca4g01130 413 Gene3D - 84 401 IPR015915 GO:0005515
Seca4g01130 413 SUPERFAMILY F-box domain 27 85 IPR036047 GO:0005515
Seca4g01130 413 PANTHER BNACNNG10540D PROTEIN 29 412 - -
Seca4g01130 413 ProSiteProfiles F-box domain profile. 27 72 IPR001810 GO:0005515
Seca4g01130 413 Pfam F-box-like 40 67 IPR001810 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01130 Seca-Chr4 18194396 18196834 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01130 - - gmx:100786481 749.584