Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01129 ATGCTTGTCTCTGGAGTATCATGGGATCTGAAATGGCTGCTGCAATTTGTAGTCTCAGCGTTTTTTTTGGCGTTTGGATTGCACACGTTGGTGAAGAACACAGCTTCCAAGTACTTTGAGGTCGACGCGAATTTCGAGGGTGAACGCCACGCCATGCCTGGCCTTCTCATGGACGATAATCTTTGCGCCGTGTGTCGCAACCACGCCAACAAGAAGTGTTCACGCTGCAAATCCGTCCGATACTGCTCAGAAGCATGCCAACAGTCACACTGGAAATCTGAACATAAGATTAAATGCAAGGAGTTTAGGAGCAACAGTGCAATAAATTTGGCTAAAACTGGACCAACTAATAGTGGGTTTAAAGCTTCCGCAGCTGTGAATGGAAGCACATCTTCAATTGCCCTGATCCCTGAATGTGGTCGGGGAACTTCTAGGCCTATCAAGCAGCCTAAAAATGCTCTTTTTCCTTATGATGAATTTGTCAAATTGTTTAACTGGGACAAGCCAGGATTTCCTCCTTGTGGACTCTTGAATTGTGGAAACAGCTGCTTTGCAAATGTGGTTCTCCAGTGTCTTTCATTCACAAGGCCGCTAATTGCCTACTTGTTGGAGAAGGATCACCGCAGAGAATGCAGCCATAATGATTGGTGCTTTTTATGTGAATTTGAAATTCATGTTGAAAAGGCAAGGCTAAGTTCAGAGGCGTTTTCTCCTATGAATATTCTCTCTCGTTTGCCTAACATTGGCGGTACACTGGGTTATGGAAGACAAGAGGATGCTCACGAGTTCATGAGGTTTGCCATTGATACTATGCAATCTGTTTGCCTTGATGAATTTGGTGGAGAAAAAGCTGTCCCTCCTAACCTTCAAGAAACAACCCTTATTCAACACATTTTTGGTGGACATCTTCAATCAGAGGTGATTTGCACAGAATGTGAGAAGAATTCAAATCAGTATGAAAATATGATGGACTTGACAGTTGAAATTCATGGAGATGCTGCTTCCTTGGAGGAATGTCTCGACCAGTTCACTGCTAAGGAGTGGCTTCATGGGGAAAATATGTATAAATGTGATGGGTGCAATGGTTATGTCAAGGCATGGAAACGTCTCACAGTGAAACGAGCTCCAAATATTCTTACAATTGCCTTAAAAAGATTTCAGAGTGGGAAGTTTGGAAAACTTAACAAGAGAGTAACTTTCCCTGCGACTTTAGATCTTAGCCCTTACATGAGTGATGTTGGAGATGGATCTGATATCTATAAGCTATATGCTGTTGTAGTACATATTGATATGCTGAATGCTTCATTTTTTGGTCACTACATTTGCTACATCAAGGATTTCCAAGGAAACTGGTATAGAATTGATGATTGGAAGGTTATGAATGTGGAATTGGAGGAGGTGCTTTCTCAGGGTGCATACATGCTGTTGTATAGCAGGGTTAGTGCTCGACCATCAGGACTTCAAAGTATTGAATCTTCAGAGACAGCAGATGTGCAAACAGTCAAAGCAGGAGTGCAGCCTGGCCCAACTGAACAAGCTGGATGCTTTTCAGATATGAAGACTGTGACTGACAGTAGAGGGTGGGAGGGTTTTCCATCTGATATTAGTCCAGAGTTGAAGGTTTCTGGCTGTAAATCTGTGTCTCTGACTGGAATGAACTCTAGTGCAGAAAGAGAACATTCTAAGGATATGGACATTATTGATGTTGCAAATGATGTTTTAGAAGAGATTTCAGGCTGCACAGAAGAGCAAGATGATAGTGATATGGTTAAATCTGGCCCTTCTCCAGTTTTGCCAAATGGCTTCTCTTGCCTTGATAAGGACTCTTCTGTTTCAAAGGATCATCAAAACATAAGAGAAGATTTAGAACATGTAGATGTGGTTAAATGCAAGTCCACAGCAGTAAAAGGCAATGCAAATTATAGCAATGGGTATGCCAGTGCAAATTGTAGCAATGGGTATGATATCCCTATTCAAGATGGTGGTGCTGTATTCTCTGGAGTTAGTTCTTGTTCCACTGAAACATCCTCTGCTGAGATGCATCAATTGAAGCGGAGATTGCCATCGTACAGTTCTGAAGCTGACGAAGGAAATGGAATTAAGAAAGTGGAAATACTGGGGAACAAGCTAATAATGTAG 2139 0.4208 MLVSGVSWDLKWLLQFVVSAFFLAFGLHTLVKNTASKYFEVDANFEGERHAMPGLLMDDNLCAVCRNHANKKCSRCKSVRYCSEACQQSHWKSEHKIKCKEFRSNSAINLAKTGPTNSGFKASAAVNGSTSSIALIPECGRGTSRPIKQPKNALFPYDEFVKLFNWDKPGFPPCGLLNCGNSCFANVVLQCLSFTRPLIAYLLEKDHRRECSHNDWCFLCEFEIHVEKARLSSEAFSPMNILSRLPNIGGTLGYGRQEDAHEFMRFAIDTMQSVCLDEFGGEKAVPPNLQETTLIQHIFGGHLQSEVICTECEKNSNQYENMMDLTVEIHGDAASLEECLDQFTAKEWLHGENMYKCDGCNGYVKAWKRLTVKRAPNILTIALKRFQSGKFGKLNKRVTFPATLDLSPYMSDVGDGSDIYKLYAVVVHIDMLNASFFGHYICYIKDFQGNWYRIDDWKVMNVELEEVLSQGAYMLLYSRVSARPSGLQSIESSETADVQTVKAGVQPGPTEQAGCFSDMKTVTDSRGWEGFPSDISPELKVSGCKSVSLTGMNSSAEREHSKDMDIIDVANDVLEEISGCTEEQDDSDMVKSGPSPVLPNGFSCLDKDSSVSKDHQNIREDLEHVDVVKCKSTAVKGNANYSNGYASANCSNGYDIPIQDGGAVFSGVSSCSTETSSAEMHQLKRRLPSYSSEADEGNGIKKVEILGNKLIM. 713
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01129 712 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 174 480 IPR028889 -
Seca4g01129 712 SUPERFAMILY Cysteine proteinases 170 488 IPR038765 -
Seca4g01129 712 CDD Peptidase_C19E 173 478 - -
Seca4g01129 712 SUPERFAMILY HIT/MYND zinc finger-like 59 103 - -
Seca4g01129 712 FunFam Ubiquitin carboxyl-terminal hydrolase 15 168 488 - -
Seca4g01129 712 Gene3D Cysteine proteinases 170 488 - -
Seca4g01129 712 ProSitePatterns Zinc finger MYND-type signature. 62 99 IPR002893 -
Seca4g01129 712 Pfam Ubiquitin carboxyl-terminal hydrolase 174 477 IPR001394 GO:0004843|GO:0016579
Seca4g01129 712 Pfam MYND finger 62 99 IPR002893 -
Seca4g01129 712 ProSiteProfiles Zinc finger MYND-type profile. 62 99 IPR002893 -
Seca4g01129 712 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 175 190 IPR018200 GO:0004843|GO:0006511
Seca4g01129 712 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 85 482 - -
Seca4g01129 712 Gene3D - 56 105 - -
Seca4g01129 712 FunFam Ubiquitin carboxyl-terminal hydrolase 15 54 103 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01129 Seca-Chr4 18186930 18193252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01129 5 485 Miscellaneous Gene Families AT4G31670 64.389 0.0 656
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01129 K11855 - gmx:100810577 1113.98