Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01121 ATGAATGACCCATTAAAGGCAGCTGCACGAGTAGGAGATATAGACTTGCTCTACAAATTGATTCAGGTGGAGCCATATATCTTGGAGGACATTGATTTGATACCATTTGTTGACACTCCATTGCACATTGCTGCTTCTGCCGGGCATACAAGTTTTGCCACTGAGATTATGAGACTCAAACCTTCTTTTGCTTGGAAGCTAAATCAGTATGGGCTTAGTCCCATGCACATTGCTTTACATAACAAGCATTATAGAATGGTGTCTCGCTTTGTACACATCAATAAGGATCTTGTCCGAGTCAAAGGGAGGGAGGGTCTTACTCCTCTGCATATTGCAACTATAATGGGAAAAACTGATCTCATGGTCAAATTCCTATCAGCTTGTCCAGATTCTATTGAAGATGTCACTGTTAAAAGTGAGACTGCTCTGCATATTGCACTGAAATATAACCAAATTCAGGCTTTTGAGGCCTTACTTGGTTGGCTTCAGAGGACCTGCCATAAACATGCTCAGAAACAGGAAAAACGGGTTCTGAACTGGCAGGACGAAGAAGGCAACACCGTTCTGCATGATTCAGTTCTCCACAGCCTCCCACAGGCAGCAGTTAGATTGTTGGTAGATAGCAACATAGACTTAAATGCCAAGAATGTAGAGGACATGACAGCTTTGGACATAGTGAGCGTAGAGATCAGGGATATGTTAGTAAAAGGTGGAGCTTTACGTGGTTTTTCACTTGGTGCAGAACCACTCCGTGAAGAAGAGTTAAGATCAAAAATTACATTCAATGAGAAAGTAGCAATTTGGGTTACTCGCCTAAAAAGGAGAATATCAAATGACACACGCAATGCTCTGTTGGTAGTTGCAATTCTTTTTGCAACAAGCACATATGAAGCAGCATTGAATCCCCCTGGTGGAGTTTATCAGGCTGAGACCAAGCCTAATAGAGGTGGTGGTAGTGGTGATGCATTGCAAGAAAATTCTGGGAAAGCTGTGATGAAACTTCAAACATTCTGTTTGTTCTGGTCATTTAACACATGTTCCTTTTATCTTTCAATTTTGATGATATGTTTGTTAATGCCTAGAGGACGCATAAGTGTTATAGTGACATCTCCATTAGCTCTGTTTTCTGGTTGCTATGTGTTCTCCATGTATGTCATCTCACCCAGCATTAAGTTTACCATTGCCACTGTGGCTCTGCCTAACTTACTCATAGCATTGTACTTTTGGGGAACTATAGTATACATTAGATTAGCCAAAAAGCTTCGAATGTATGGACGTGAACTCAAAGACATGTCCAGGTTTTCAGCAGGAAACAGATGGTAA 1323 0.4127 MNDPLKAAARVGDIDLLYKLIQVEPYILEDIDLIPFVDTPLHIAASAGHTSFATEIMRLKPSFAWKLNQYGLSPMHIALHNKHYRMVSRFVHINKDLVRVKGREGLTPLHIATIMGKTDLMVKFLSACPDSIEDVTVKSETALHIALKYNQIQAFEALLGWLQRTCHKHAQKQEKRVLNWQDEEGNTVLHDSVLHSLPQAAVRLLVDSNIDLNAKNVEDMTALDIVSVEIRDMLVKGGALRGFSLGAEPLREEELRSKITFNEKVAIWVTRLKRRISNDTRNALLVVAILFATSTYEAALNPPGGVYQAETKPNRGGGSGDALQENSGKAVMKLQTFCLFWSFNTCSFYLSILMICLLMPRGRISVIVTSPLALFSGCYVFSMYVISPSIKFTIATVALPNLLIALYFWGTIVYIRLAKKLRMYGRELKDMSRFSAGNRW. 441
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01121 440 ProSiteProfiles Ankyrin repeat region circular profile. 104 125 - -
Seca4g01121 440 Gene3D - 1 245 IPR036770 -
Seca4g01121 440 Pfam Ankyrin repeats (3 copies) 101 159 IPR002110 GO:0005515
Seca4g01121 440 Pfam Ankyrin repeats (3 copies) 7 91 IPR002110 GO:0005515
Seca4g01121 440 Pfam Domain of unknown function 278 364 IPR026961 -
Seca4g01121 440 PANTHER HOMEOBOX PROTEIN WARIAI 10 394 - -
Seca4g01121 440 SMART ANK_2a 104 134 IPR002110 GO:0005515
Seca4g01121 440 SMART ANK_2a 184 214 IPR002110 GO:0005515
Seca4g01121 440 SMART ANK_2a 70 99 IPR002110 GO:0005515
Seca4g01121 440 SMART ANK_2a 138 168 IPR002110 GO:0005515
Seca4g01121 440 SMART ANK_2a 36 65 IPR002110 GO:0005515
Seca4g01121 440 SUPERFAMILY Ankyrin repeat 4 226 IPR036770 -
Seca4g01121 440 ProSiteProfiles Ankyrin repeat profile. 104 125 IPR002110 GO:0005515
Seca4g01121 440 ProSiteProfiles Ankyrin repeat profile. 184 217 IPR002110 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01121 Seca-Chr4 18010553 18012477 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01121 5 414 Miscellaneous Gene Families AT5G15500 39.524 2.02e-88 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01121 - - gmx:100790227 617.076