Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01080 ATGAGATGCACTTTGGTAATTGGTCTATTGGTGTTGATTTTGTGGAGCAATCTTTGTGAGTCAACAACATCATCCTCTCCCCAATGTAAAGCATGGCTAGTGCAATCCATCCCCACCAATATGCCCCACCTCTCCCCTGTTCCCGGCGTCCTCTCTACTGGGGATGTGCTCCGGTGGCTGGCTGCAAACTCCACCAGGAGGCTGGACATAATTGCTCAGTACTGGCAACTGCTAGCTTCTCCCGGTGATCCTCGCTCTGGGGATTATGGTTACACTCAACATCAGATGCATGAATTTGGTGCCCATCAAGGAGCTGCCGTTTATCAGGCATTAGATACTGCTGCCAACCGTAATGTTAGTATCAGGTTACTGTCCCACTCTGGAGTCTATCCATCATTTAACTTAGAACCATCCAAACTTGCTGCTGGAAGGCCAAATGTTGAGAATGTGACCTTGCTGCTAGAGGATTGGTGGGGCTCGGGCATTGTCCATGCCAAAGTTTGGATATCTGATAGTAGGGATGTGTATATTGGATCTGCAAACAATGACTGGAAATCTCTTACACAGGTCAAGGAAGTTGGAATTTATCTTGTTGGTTGTCCTGGAATAGCTAAAAAGGTTGAAGTCTACTTTAACAATTTATGGACACTCGCATCTCTTAATTCTTCAGCTTACACAAAAACAGTGTTAGATCAACAGTGGCAAGTTGAAAGAAAGGTTCCTTGCTGGTCGCATTTCATTGATCCTAGAGAGAGGTGCAAGTCACCTCTTCCTCAATATGTGGAGACTCCTCATGTTGCAGGATATCCTATTCTGTCTGACCCTTATATGTTTGAAGTTTCAATTCAAACTCCTGGGAATAACTATTCAACAAAGCTCTCCCAAATCAGCTATCTCTCTTTTGCTCCCCCGGAGCTATCATTTGGCAGTTATCAGGCTGATGAGCAGGCATGGATTGATACAATTAAATCTGTTGGAACAAGGGAGACAGTTAGAATCAATACCATGGACTGGTTGGGTCAGTCACAATTTATGGACCAAACAATTTTTTGGTCATCTCTATCCTCTGCAATATCAGAGGTTGTGTTTTCCAAGCATGCAACAGTAAAAATATTGGTGGCATATTGGGCACACTTCATCAATAACACAGATGTGTACCTGAAGTCTCTCCTCTACACCAACAATCTCTGTTCTTCCTCCAAATACAACAAATGCTCTGGTAAAGTTGAGATCAAATATTATGTGGTTCCAGGTTTCAACAAGACAGGGCCTGCCATTCAAGGTGGAACTAGTACAGGAAACATATACCCTGGTTTTACAAGAGTCAATCATGGAAAATATGCAGTTAGCGATGTAAGGGCCCACATTGGGACTAGCAATCTGGTATGGGACTACTTCTATACAACAGCAGGTGTCAGCTTCGGGACATACAACACTGCCATCCTCTCTCAACTTAGGGAAATTTTTGATGCTGACTGGAACTCACCCTATGCTGTTCCTGTTCAAGAGCTGGAGAAAGGTCATACATGTTCAATGTAA 1539 0.4373 MRCTLVIGLLVLILWSNLCESTTSSSPQCKAWLVQSIPTNMPHLSPVPGVLSTGDVLRWLAANSTRRLDIIAQYWQLLASPGDPRSGDYGYTQHQMHEFGAHQGAAVYQALDTAANRNVSIRLLSHSGVYPSFNLEPSKLAAGRPNVENVTLLLEDWWGSGIVHAKVWISDSRDVYIGSANNDWKSLTQVKEVGIYLVGCPGIAKKVEVYFNNLWTLASLNSSAYTKTVLDQQWQVERKVPCWSHFIDPRERCKSPLPQYVETPHVAGYPILSDPYMFEVSIQTPGNNYSTKLSQISYLSFAPPELSFGSYQADEQAWIDTIKSVGTRETVRINTMDWLGQSQFMDQTIFWSSLSSAISEVVFSKHATVKILVAYWAHFINNTDVYLKSLLYTNNLCSSSKYNKCSGKVEIKYYVVPGFNKTGPAIQGGTSTGNIYPGFTRVNHGKYAVSDVRAHIGTSNLVWDYFYTTAGVSFGTYNTAILSQLREIFDADWNSPYAVPVQELEKGHTCSM. 513
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01080 512 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 159 186 IPR001736 GO:0003824
Seca4g01080 512 PANTHER PHOSPHOLIPASE D - RELATED 8 510 - -
Seca4g01080 512 CDD PLDc_vPLD3_4_5_like_2 298 494 - -
Seca4g01080 512 CDD PLDc_vPLD3_4_5_like_1 33 200 - -
Seca4g01080 512 Gene3D Endonuclease Chain A 52 219 - -
Seca4g01080 512 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 439 465 IPR001736 GO:0003824
Seca4g01080 512 Gene3D Endonuclease Chain A 298 496 - -
Seca4g01080 512 SUPERFAMILY Phospholipase D/nuclease 308 508 - -
Seca4g01080 512 SUPERFAMILY Phospholipase D/nuclease 57 217 - -
Seca4g01080 512 Pfam PLD-like domain 103 215 IPR025202 -
Seca4g01080 512 SMART pld_4 439 465 IPR001736 GO:0003824
Seca4g01080 512 SMART pld_4 159 186 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01080 Seca-Chr4 17454321 17459468 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01080 K16860 - gmx:100815396 873.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01080 4 17454321 17459468 Seca4g01080 4 17454321 17459468 ECH