Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01079 ATGGATCACATTGGTTCCAGCAAGAACGCCAACAAAGGTGAGGTAGAAATGAGGGACGTAGATGATGACGATGTGGACATAGACATGGACCTGGACCTGGAGGTGCCAACGAATGCTGAAATCCTTGAAGAGATAGGAGAGGATACGGTGAAATATTTCTGCAAGACCGCTTCGATGTTGTTCTTCAAAGAGTATGGTCTTATCAGTCACCAAATCAACTCTTACAATCATTTCATCACCACTGGTCTTCAAAACACCTTCGATTCCTTCGGCGACCTCATTGTTACGCCTGGCTTTGATCCTTCCAAGAAGGGAGACAGCGACCACTTCCGTTACGCTTCCATCAGGTTCGGTAAGGTCACCCTTGATCGCCCTAGGATTTGGGGAGGCGAAGGTAATGCTCAAGAGTTTAAGATGCTCCCCAGGCATGCGCGGCTCCAGAGGATGACTTATTCTTCGAAAATGAAAGTCAATGTTCAAGTTCAGGTGTATATTCCGAAGAAGGTTCGAAGTGATAAATTTAAGACCGGAAAAGAAGAATTCATTGATAAAGAGATTGTCAAGGAAGACAGCAGAGAAATAATCATTGGGAGACTGCCTGTCATGGTCATGTCTGATCTGTGCTGGATGAAAGAAGAAGAAAAGCGTGACTGTGAATTTGATCTTGGAGGCTACTTTTTGATCAAGGGTGCAGAGAAGACTTTTATTGCGCAGGAGCAACTGTATCTAAAGAGGCTCTGGGTTTTAAATAATCCAGGTTGGACAATTGCGTACAAGTCGCAGATGAAGAGAAATAGGATAGTTGTTAAACTGGTAGGAAATTCCAAAATTGAAGAAATTAACAATGGAGAGAAAGTCCTTACTGCATATTTTCTGTCTGTTGAGGTTCCTCTTTGGATACTCTTTTTTGGTCTTGGCATTTCGTCAGACAAAGAGATTATAGATCTCATTGAATATGACAACAGTGACGCCAGAATTGAAAATATTCTCTTTGCATCCATTCGCGATGCTGATGAGAAATGTGAAGGCTTTCGTAGAGGGAAGAACGCACTTCATTACATGGAGGAACATGTGAAAGCTGTTCAATTTCCACCTCCGGAGTCTATTGATGAGTGCCTTAACATGTATCTCTTTCCTGGCATTAGAGGCTTGAATAGAAAGGCACGCTACCTTGCGTATATGGTGAAGGGTCTCTTAATGGCTTATACTGGCCACAGAAAATGCGATAACAGGGATGATTTTCGAAATAAAAGGCTTGACTTGGCAGGTGAGCTGCTTGAGCGTGAGCTAAAAGTGCACATTGCACATGCTCGGAAGCGAATGTCAAAAGCTTTGCAGAGAGACCTTTATGGAGATCGTGAAGTCCGCCCAATTGAGCACTATCTTGATGCTTCCATAATTACAAATGGTCTCCAAAGAGCATTTTCTACTGGAGCATGGACACATCCTTATAAAAGGTTAGAAAGGATTTCTGGTGTGGTTGCAAATCTTGGGCGTACTAATCCATTACAGACTATGGCTGAATTAAGAAGAACAAGACAACAAGTACAGTACACAGGAAAGGTTGGGGATGCTAGATACCCGCATCCTTCTCACTGGGGCAAGGTCTGTTTCCTCTCTACCCCGGATGGTGAAAATTGTGGACTAGTAAAAAATTTGGCTGTCACAGGACTAGTAAGCACCGACATATCTGAATCTATACTGCCTCAGTTGTTTGATTGTGGAATGGAAGAACTTGTTGATGATACTACCACTTCTCTGGGCCAAAAAGGCAAAGTCTTCCTAAATGGGGATTGGGTTGGAGTTTGTCCAAATCCGATTTCCTTTGTGGCAGAGCTACGAAGTAAAAGACGTAGAAATGAATTGCCTCATCAGGTGGAAATAAAAAGAGATCAATATCTACAAGAAGTGCGCATATACTCTGATGCAGGAAGGATTCTACGTCCACTTTTGGTAGTTGGTAATCTACTCAATATTAAAGGATCTAAATCGGAACATCGTTCTTTCCAGTCCCTATTGGATAATGGTGTGATTGAGCTGATTGGGCCTGAAGAAGAGGAAGACTGCTGTACTGCTTGGGGTGTTCAGTATTTATATGCAGAAGAGGGAAAATCTTCTGTGAAGTACACACACTGTGAACTTGATATGTCATTCTTATTGGGTTTAAGCTGTTCACTTGTACCATTTGCTAATCATGACCATGCAAGGAGGGTACTCTACCAGTCTCAAAAGCACTCTTCACAGGCTATTGGCTTTTCCACAACAAACCCTGATATTAGAGTTGATACTTTGTCTCACCGATTATTTTATCCTCAGAAGCCACTTTTCCGGACAATGACATCTGATTGCCTAGGAACCAAATTACCATTGGCAGTAGGTAAAAATATAGATCTTCTTCCTAAGGCTGAATTCTATAATGGGCAGAATGCAATTGTGGCTGTCAATGTACATCTAGGATACAATCAAGAGGATTCTCTGGTGATGAACCGCTCTTCTTTGCAGCGTGGTATGTTCAGATCTGAACACATAAGGAGTTACAAATCTGAAATTGAAAATAACGAATCTTCAGAGAAGAAAAGGAAACCTGATGACATTGTAAATTTTGGAAAGGTACAAAGTAAAATTGGTCGAGTTGATAGCCTTGATGATGATGGTTTTCCATTTGTTAGTGCAAATTTGCAAAGTGGTGATATTATTATTGGGCGGGGTGCTGAGTCAGGGGCAGACCATAGTGTAAAGTTAAAGCACACTGAAAGGGGTTATGTTGAAAAGGTGGTGCTGTCTTCAAATGATGAGGGGAAGAATTTTGCTGTGGTTTCATTAAGACAGGTTCGAAGTCCGGTCCTTGGAGACAAGTTCTCCAGTATGCATGGACAAAAGGGTGTTTTAGGATTTCTGGAGTCTCAGGAAAATTTTCCTTTCACAAGACAGGGTATTGTTCCTGATATTGTCATAAATCCGCATGCATTTCCCTCACGACAAACTCCTGGGCAACTCCTAGAGGCTGCTTTAGGAAAGGGGATTGCTTGTCATGGTTCATTGAGGCATGCTACCCCTTTCTCCACTCCATCCGTTGAAGCCATTACAGACCAGCTTCACAGAGCTGGGTTTTCAAGATGGGGAAATGAGAGGGTTTACAATGGGAGGACTGGTGAGATGGTCCGTTCACTCATATTTATGGGACCAACATTCTACCAGCGACTGCACCACATGTCTGAGGACAAAGTGAAATTCCGGAACACCGGTCCAGTTCACCCACTGACCCGACAGCCTGTTGCTGACAGGAAGCGATTTGGAGGCATCAAATTCGGTGAAATGGAGAGGGATTGCCTGATAGCTCATGGTGCATCTGCCAACCTGTATGAACGCCTCTTTACTCTGAGTGATTGCTCTCAGATACACATTTGCAGTAAGTGCAAAAATGTTGCAAATGTGATCTTGCGGCCGGTGTCTGGTGGACGTAAAATTCGAGGTCCCTATTGCCGCTTCTGTGAATCTGTGGATGACATTGTGGTTGCCAGTGTCCCATATGGAGCTAAATTACTGTGCCAGGAGCTATTTAGCATGGGCATCAATCTGAAATTCGAAACCGAACTCTGCTAG 3603 0.4308 MDHIGSSKNANKGEVEMRDVDDDDVDIDMDLDLEVPTNAEILEEIGEDTVKYFCKTASMLFFKEYGLISHQINSYNHFITTGLQNTFDSFGDLIVTPGFDPSKKGDSDHFRYASIRFGKVTLDRPRIWGGEGNAQEFKMLPRHARLQRMTYSSKMKVNVQVQVYIPKKVRSDKFKTGKEEFIDKEIVKEDSREIIIGRLPVMVMSDLCWMKEEEKRDCEFDLGGYFLIKGAEKTFIAQEQLYLKRLWVLNNPGWTIAYKSQMKRNRIVVKLVGNSKIEEINNGEKVLTAYFLSVEVPLWILFFGLGISSDKEIIDLIEYDNSDARIENILFASIRDADEKCEGFRRGKNALHYMEEHVKAVQFPPPESIDECLNMYLFPGIRGLNRKARYLAYMVKGLLMAYTGHRKCDNRDDFRNKRLDLAGELLERELKVHIAHARKRMSKALQRDLYGDREVRPIEHYLDASIITNGLQRAFSTGAWTHPYKRLERISGVVANLGRTNPLQTMAELRRTRQQVQYTGKVGDARYPHPSHWGKVCFLSTPDGENCGLVKNLAVTGLVSTDISESILPQLFDCGMEELVDDTTTSLGQKGKVFLNGDWVGVCPNPISFVAELRSKRRRNELPHQVEIKRDQYLQEVRIYSDAGRILRPLLVVGNLLNIKGSKSEHRSFQSLLDNGVIELIGPEEEEDCCTAWGVQYLYAEEGKSSVKYTHCELDMSFLLGLSCSLVPFANHDHARRVLYQSQKHSSQAIGFSTTNPDIRVDTLSHRLFYPQKPLFRTMTSDCLGTKLPLAVGKNIDLLPKAEFYNGQNAIVAVNVHLGYNQEDSLVMNRSSLQRGMFRSEHIRSYKSEIENNESSEKKRKPDDIVNFGKVQSKIGRVDSLDDDGFPFVSANLQSGDIIIGRGAESGADHSVKLKHTERGYVEKVVLSSNDEGKNFAVVSLRQVRSPVLGDKFSSMHGQKGVLGFLESQENFPFTRQGIVPDIVINPHAFPSRQTPGQLLEAALGKGIACHGSLRHATPFSTPSVEAITDQLHRAGFSRWGNERVYNGRTGEMVRSLIFMGPTFYQRLHHMSEDKVKFRNTGPVHPLTRQPVADRKRFGGIKFGEMERDCLIAHGASANLYERLFTLSDCSQIHICSKCKNVANVILRPVSGGRKIRGPYCRFCESVDDIVVASVPYGAKLLCQELFSMGINLKFETELC. 1201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01079 1200 ProSitePatterns RNA polymerases beta chain signature. 950 962 IPR007121 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 Gene3D - 408 590 - -
Seca4g01079 1200 Gene3D - 60 242 - -
Seca4g01079 1200 Pfam RNA polymerase Rpb2, domain 3 497 556 IPR007645 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 Pfam RNA polymerase Rpb2, domain 6 724 1097 IPR007120 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 Pfam RNA polymerase Rpb2, domain 2 273 420 IPR007642 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 Gene3D - 725 1083 IPR037033 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 FunFam DNA-directed RNA polymerase subunit beta 827 946 - -
Seca4g01079 1200 Gene3D - 755 946 IPR014724 GO:0003899
Seca4g01079 1200 FunFam DNA-directed RNA polymerase subunit beta 408 596 - -
Seca4g01079 1200 Pfam RNA polymerase Rpb2, domain 5 669 715 IPR007647 GO:0006351
Seca4g01079 1200 Gene3D RNA polymerase alpha subunit dimerisation domain 1084 1198 - -
Seca4g01079 1200 FunFam DNA-directed RNA polymerase subunit beta 1084 1198 - -
Seca4g01079 1200 Pfam RNA polymerase Rpb2, domain 7 1099 1197 IPR007641 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 Pfam RNA polymerase Rpb2, domain 4 593 653 IPR007646 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 Gene3D RNA polymerase Rpb2, domain 2 252 407 IPR037034 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 FunFam DNA-directed RNA polymerase subunit beta 59 243 - -
Seca4g01079 1200 Pfam RNA polymerase beta subunit 66 457 IPR007644 GO:0003677|GO:0003899|GO:0006351
Seca4g01079 1200 PANTHER DNA-DIRECTED RNA POLYMERASE I SUBUNIT 2 60 1194 IPR015712 GO:0003899|GO:0006351|GO:0032549
Seca4g01079 1200 CDD RNA_pol_B_RPB2 67 1196 IPR015712 GO:0003899|GO:0006351|GO:0032549
Seca4g01079 1200 SUPERFAMILY beta and beta-prime subunits of DNA dependent RNA-polymerase 52 1198 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01079 Seca-Chr4 17446472 17453640 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01079 K16252 - gmx:100779425 2069.28
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01079 4 17446472 17453640 Seca4g01079 4 17446472 17453640 ECH