Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01072 ATGGATGAAGATGAAATAGTTGGATATGTGACTGCGTACCTGAAGAAGAAAGGGTTCACGCAAACGGAGAAGGTTTTTCAGGAAGAATTCCAAAACAACAAGAACAATTCCCCTCTCGAACCCGACATTGCCAACCACCTCGCTGCACTCTCACAATTGGAGAGTGGTCCTGCAAGGTTCCATGATGGATATAGCAGACTGAGATCATGGACTTACTCTTCACTAGATTTGTACAGGCACGAGTTGCTTCGTGTGCTTTATCCAGTATTTATCCATTGTTTTATGGATCTCGTGGCTAAAGGGCATATTCAGGAAGCTCGGAACTTTTTCAATGCCTTCCGTGAAGACCATGAAATGATGCACTTACGTGACCTTCAGAAGTTGGAAGGAGTTCTTTCTCCTACTCATCTGGAGTTAACATTAAATAATCCACCCAACAATGTTCTTCTTACCCAGGAAATGGAATTTTCTCATTCACTTAGGCAAAGCAAATTCAACATAAAGATATGTGAGTTGCTTGAAGACTCTCTCGAAGAACGGCTGGAGAAGGCTGGGGTGAAGGCGAAGCAAAAGAGGGGGAGAATGATGAGAAAAACATCAAGTGAAGTAGGAAAGCAAGGTGCTTCAGTCAAAAAGGTGAAAAAGGACAAGGGTGGAGGTGCAACAGGGAAAAGTGCAAAACCTGAAGCTAACACTGTACCAGCAGCACCTCGAGTTAAGCCAGAACTCCCCTTGCAAATATTTGAAGTAAGCCCAACTGAGGTAGAACACTCCATCCTTGAAGATTTAAGGAACCGGGTACAACTTGGTAGTTCTGCACTGCCTTCAGTTAGCTTTTACACATTTATCAATACACACAATGGTTTAAACTGTTCGTCAATATCCCATGATGGATCATTGGTTGCTGGAGGATTTTCGGACTCATCACTGAAGATCTGGGATATGGCAAAGCTTGGACAACAGCCCACCAGTAGTGAGTTTGTTTTCATAAATTTCTCTGTTTAA 1005 0.4289 MDEDEIVGYVTAYLKKKGFTQTEKVFQEEFQNNKNNSPLEPDIANHLAALSQLESGPARFHDGYSRLRSWTYSSLDLYRHELLRVLYPVFIHCFMDLVAKGHIQEARNFFNAFREDHEMMHLRDLQKLEGVLSPTHLELTLNNPPNNVLLTQEMEFSHSLRQSKFNIKICELLEDSLEERLEKAGVKAKQKRGRMMRKTSSEVGKQGASVKKVKKDKGGGATGKSAKPEANTVPAAPRVKPELPLQIFEVSPTEVEHSILEDLRNRVQLGSSALPSVSFYTFINTHNGLNCSSISHDGSLVAGGFSDSSLKIWDMAKLGQQPTSSEFVFINFSV. 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01072 334 Pfam WD40 associated region in TFIID subunit, NTD2 domain 55 183 IPR007582 -
Seca4g01072 334 ProSiteProfiles Trp-Asp (WD) repeats profile. 282 315 IPR001680 GO:0005515
Seca4g01072 334 SUPERFAMILY Taf5 N-terminal domain-like 46 180 IPR037264 -
Seca4g01072 334 ProSitePatterns Trp-Asp (WD) repeats signature. 301 315 IPR019775 -
Seca4g01072 334 ProSiteProfiles LIS1 homology (LisH) motif profile. 2 34 IPR006594 GO:0005515
Seca4g01072 334 MobiDBLite consensus disorder prediction 208 222 - -
Seca4g01072 334 CDD TAF5_NTD2 57 171 IPR007582 -
Seca4g01072 334 Gene3D TFIID subunit TAF5, NTD2 domain 38 188 IPR037264 -
Seca4g01072 334 MobiDBLite consensus disorder prediction 188 238 - -
Seca4g01072 334 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 3 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01072 Seca-Chr4 17281307 17288195 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01072 K03130 - tcc:18587715 320.087