Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01067 ATGGCTCTCGGATTCTTCGGTCTCGCTCTTTTCCTTTTCCTCACTCTCGATTCTGACATCCCTTATTCTCCTTCTTCCACTGCCTCTGCCTCTGCAGCTTCCTCCGAAGGCGTCGAGGTTCAAATTACTTACGGCTCCGTTATAAAGCTTATGCACGAGAAGACCAAATTTCGGTTGCATTCTCATGATGTGCCATATGGTTCTGGCAGTGGTCAACAATCAGTTACTGGTTTTCCCAGTGTGGACGATTCCAATAGTTACTGGATTGTTAGACCTCAGCCTGAAACTCCTGCTAAACAAGGTGACGCCATTAAAAGTGGCACAATCATTAGATTGCAGCACATGAGAACAAGGAAGTGGCTGCACAGCCATCTGCATGCATCCCCAATATCAGGCAATCTTGAGGTGAGTTGCTTTGGAGGAGATTCTGACTCTGACACTGGGGACCATTGGAGGCTCTTAATAGAAGGAAGTGGGAAGACTTGGAAGCAGGATCAGAGGGTTCGGCTTCAGCATGTTGACACTGGAGGGTATCTACATAGTCATGATAAGAAATACACACGGATTGCTGGTGGACAGCAAGAGGTTTGCGGTGTTCGTGAGAAGCGTGCTGACAATGTCTGGTTGGCAGCAGAAGGTGTGTACCTTCCAGTCACTGAAAGCAAATGA 669 0.4768 MALGFFGLALFLFLTLDSDIPYSPSSTASASAASSEGVEVQITYGSVIKLMHEKTKFRLHSHDVPYGSGSGQQSVTGFPSVDDSNSYWIVRPQPETPAKQGDAIKSGTIIRLQHMRTRKWLHSHLHASPISGNLEVSCFGGDSDSDTGDHWRLLIEGSGKTWKQDQRVRLQHVDTGGYLHSHDKKYTRIAGGQQEVCGVREKRADNVWLAAEGVYLPVTESK. 223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01067 222 Pfam MIR domain 73 206 IPR016093 -
Seca4g01067 222 FunFam Stromal cell-derived factor 2-like protein 25 222 - -
Seca4g01067 222 ProSiteProfiles MIR domain profile. 159 213 IPR016093 -
Seca4g01067 222 PANTHER STROMAL CELL-DERIVED FACTOR 2-LIKE PROTEIN 1 217 - -
Seca4g01067 222 SUPERFAMILY MIR domain 40 213 IPR036300 -
Seca4g01067 222 SMART mir_2 159 213 IPR016093 -
Seca4g01067 222 SMART mir_2 101 156 IPR016093 -
Seca4g01067 222 SMART mir_2 39 93 IPR016093 -
Seca4g01067 222 ProSiteProfiles MIR domain profile. 101 156 IPR016093 -
Seca4g01067 222 Gene3D - 25 222 - -
Seca4g01067 222 ProSiteProfiles MIR domain profile. 39 93 IPR016093 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01067 Seca-Chr4 17167119 17172651 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01067 - - gmx:100811638 392.889