Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01063 ATGGCAACCAGAAGAACTCCTACGCTAACCAAATCCGTTTTCGCCGCCGTAACTGCTTCTCGCCCTTCTCTCTCTCGCTCCCTCACGCGCTCTCGCTCAGCACCACTGTTCTCTTCCTTCCCTCACGCTTCAGACAATACGACAAATCCCCTTTCTCGGTCTCATCTTTTCGACACTCTCGCAGCCACCAATGTCGCCTCCGCTAAGTTCCTCTCCCACTCTTTCACTCGCAACTTCCACGCCTCCAATCCCTCCTACCGCTCTGCTGGAACCTCTCAGATTACACAGACAGAGTTCACAGAAATGGCATGGGAGGGCATTCTTGGTGCTGTTGATGCTGCACGAGTTAGTAAACAACAAGTTGTGGAATCTGAGCATTTAATGAAAGCCCTCTTGGAGCAAAAGGATGGTTTGGCTCGAAGAATATTTACTAAGGCAGGATTGGACAACACATCAGTTCTACAGGCTACTGATAACTTTATAGCTCAGCAACCTAAGGTTACAGGTGACACTTCTGGTCCTTTACTTGGCTCACATCTTAACTCCCTCTTGGACAATGCTCGGAAGCACAAGAAAGAAATGAGTGATGAATATGTGTCTGTGGAGCACCTTTTGCTAGCATTTCATTCAGATAAGAGGTTTGGGCAACAATTATTTAAGAATCTTCAGCTTAGTGAGAAGTCTTTGAAGGATGCTGTACAAGCTGTTCGTGGAAGTCAAAGAGTGACCGATCAAAATCCTGAGGGGAAATATGAGGCATTGGACAAGTATGGAAATGACCTGACTGAACTTGCTAGGCGTGGCAAGCTTGATCCTGTCATTGGTCGAGATGATGAAATTCGGCGCTGTATCCAGATATTGTCGAGGAGAACGAAAAACAATCCAGTTATTATTGGTGAACCTGGTGTGGGGAAAACTGCAATCGCTGAAGGATTAGCTCAACGCATTGTGCGTGGAGATGTTCCAGAGCCATTGATGAACCGGAAGTTGATCTCCCTCGATATGGGGTCATTGCTTGCTGGTGCCAAGTTTCGTGGAGATTTTGAAGAAAGGTTGAAAGCTGTCCTAAAGGAAGTTACAGCATCAAATGGACAAATAATTTTGTTTATTGATGAAATTCATACTGTTGTAGGTGCAGGGGCTACAAGTGGTGCAATGGATGCTGGGAACTTGTTGAAGCCAATGCTTGGACGAGGTGAACTTCGATGTATAGGAGCAACTACATTGAATGAGTATAGAAAATACATTGAAAAGGATCCAGCACTTGAGCGTAGATTTCAACAAGTGTATTGCATTCAACCATCTGTTGAAGATACAATATCGATTCTTCGTGGATTGCGTGAGCGTTATGAGTTGCATCATGGAGTCAAAATATCAGATAGTGCACTTGTTTCTGCTGCAATTCTTGCAGATCGGTACATCACTGAACGCTTCCTACCAGACAAAGCCATTGATCTTGTCGATGAAGCTGCTGCAAAGCTGAAGATGGAGATCACCTCTAAGCCTACAGAATTGGATGAGATAGACAGAGCTGTCTTGAAATTGGAGATGGAAAAACTCTCTCTGAAAAATGATACTGACAAGGCATCTAAAGAAAGATTGAGTAAGCTTGAAAGTGATTTGAGTTTACTTAAACAGAAGCAAAAAGAATTGACAGATCAATGGGACAGTGAAAAAGTTTTAATGACTCGGATAAGATCAATCAAAGAAGAGATTGATAGAGTCAACCTAGAAATGGAAGCTGCTGAGCGTGATTATGACCTGAACCGTGCTGCTGAGCTTAAGTATGGAACTTTGATGTCCCTTCAGCGCCAATTAGAAGAAGCTGAAAAGAACCTAGCTGACTTCCGAACATCCGGACAATCTTTACTTCGAGAAGAGGTCACTGACCTTGATATTACTGAGATTGTAAGCAAATGGACTGGTATACCATTATCAAACCTCCAACAAACAGAGAGAGAAAAGTTAGTTTTGCTGGAACAGGTTCTTCATAAGAGGGTGGTTGGTCAGGATATTGCTGTAAAATCTGTGGCTGATGCAATTCGCCGTTCAAGGGCTGGATTGTCTGACCCAAATCGGCCATTTGCAAGCTTCATGTTCATGGGTCCAACTGGTGTGGGCAAAACTGAGCTTGCCAAGGCTTTGGCTGGTTACTTGTTTAACACAGAAAATGCCCTTGTTAGAATTGATATGAGTGAGTACATGGAGAAACATGCTGTTTCACGTTTAGTTGGGGCCCCTCCTGGTTATGTTGGTTATGAAGAAGGTGGTCAGCTAACTGAAGTGATCCGAAGAAGACCCTACTCTGTGGTACTATTTGATGAAATAGAGAAGGCACATCATGATGTCTTCAACATCTTGTTACAGTTGTTGGATGATGGAAGGATCACTGATTCTCAAGGAAGGACTGTTAGCTTCACGAATTGTGTTGTGATTATGACTTCAAACATTGGCTCCCATTACATACTTGAAACCCTTCGTAGCACACAAGATGACAAAATTGCTGTTTATGATCAGATGAAAAGGCAAGTTGTTGAGTTGGCTAGGCAAACATTCCGCCCAGAGTTCATGAACCGCATTGACGAGTATATTGTTTTCCAGCCTCTGGATTCCAAACAGATCACCAAAATAGTGGAGCTCCAGATGGAACGAGTGAAGAACAGGCTCAAGCAGAAGAAAATTGATCTTCATTACACACAAGAAGCTGTTGAACTTCTTGGTGTATTGGGTTTTGATCCGAATTTTGGGGCAAGGCCAGTTAAAAGAGTAATACAACAATTGGTTGAAAATGAAGTTGCTATGGGGGTTTTAAGGGGAGATTTCAAAGAAGAGGACTCGATCGTTGTTGATGCTGATGTGACTCCATCAGGCAAGGAACGTTCTCCCCTAAATAGACTACTTATTAAGAAGCTGGACAGCCATGTTGCAGATGCCATGGTTGCCAATGACTAA 2952 0.4339 MATRRTPTLTKSVFAAVTASRPSLSRSLTRSRSAPLFSSFPHASDNTTNPLSRSHLFDTLAATNVASAKFLSHSFTRNFHASNPSYRSAGTSQITQTEFTEMAWEGILGAVDAARVSKQQVVESEHLMKALLEQKDGLARRIFTKAGLDNTSVLQATDNFIAQQPKVTGDTSGPLLGSHLNSLLDNARKHKKEMSDEYVSVEHLLLAFHSDKRFGQQLFKNLQLSEKSLKDAVQAVRGSQRVTDQNPEGKYEALDKYGNDLTELARRGKLDPVIGRDDEIRRCIQILSRRTKNNPVIIGEPGVGKTAIAEGLAQRIVRGDVPEPLMNRKLISLDMGSLLAGAKFRGDFEERLKAVLKEVTASNGQIILFIDEIHTVVGAGATSGAMDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDPALERRFQQVYCIQPSVEDTISILRGLRERYELHHGVKISDSALVSAAILADRYITERFLPDKAIDLVDEAAAKLKMEITSKPTELDEIDRAVLKLEMEKLSLKNDTDKASKERLSKLESDLSLLKQKQKELTDQWDSEKVLMTRIRSIKEEIDRVNLEMEAAERDYDLNRAAELKYGTLMSLQRQLEEAEKNLADFRTSGQSLLREEVTDLDITEIVSKWTGIPLSNLQQTEREKLVLLEQVLHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPFASFMFMGPTGVGKTELAKALAGYLFNTENALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTEVIRRRPYSVVLFDEIEKAHHDVFNILLQLLDDGRITDSQGRTVSFTNCVVIMTSNIGSHYILETLRSTQDDKIAVYDQMKRQVVELARQTFRPEFMNRIDEYIVFQPLDSKQITKIVELQMERVKNRLKQKKIDLHYTQEAVELLGVLGFDPNFGARPVKRVIQQLVENEVAMGVLRGDFKEEDSIVVDADVTPSGKERSPLNRLLIKKLDSHVADAMVAND. 984
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01063 983 Pfam AAA lid domain 435 537 IPR041546 -
Seca4g01063 983 CDD AAA 274 434 - -
Seca4g01063 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 743 761 IPR001270 GO:0005524
Seca4g01063 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 772 790 IPR001270 GO:0005524
Seca4g01063 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 698 716 IPR001270 GO:0005524
Seca4g01063 983 PRINTS ATP-dependent Clp protease ATP-binding subunit signature 805 819 IPR001270 GO:0005524
Seca4g01063 983 Pfam C-terminal, D2-small domain, of ClpB protein 869 949 IPR019489 -
Seca4g01063 983 FunFam ATP-dependent chaperone ClpB 869 957 - -
Seca4g01063 983 PANTHER ATP-DEPENDENT CLP PROTEASE 100 960 - -
Seca4g01063 983 Coils Coil 534 554 - -
Seca4g01063 983 Pfam AAA domain (Cdc48 subfamily) 693 862 IPR003959 GO:0005524|GO:0016887
Seca4g01063 983 SUPERFAMILY Double Clp-N motif 98 249 IPR036628 -
Seca4g01063 983 Gene3D - 95 241 IPR036628 -
Seca4g01063 983 ProSitePatterns Chaperonins clpA/B signature 1. 387 399 IPR018368 GO:0005524
Seca4g01063 983 Gene3D - 436 641 IPR027417 -
Seca4g01063 983 SMART AAA_5 694 851 IPR003593 GO:0016887
Seca4g01063 983 SMART AAA_5 291 436 IPR003593 GO:0016887
Seca4g01063 983 SMART ClpB_D2_small_2 869 963 IPR019489 -
Seca4g01063 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 643 949 IPR027417 -
Seca4g01063 983 Gene3D - 869 961 - -
Seca4g01063 983 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 252 642 IPR027417 -
Seca4g01063 983 CDD RecA-like_ClpB_Hsp104-like 655 866 - -
Seca4g01063 983 Coils Coil 565 585 - -
Seca4g01063 983 Coils Coil 592 626 - -
Seca4g01063 983 Gene3D - 242 435 IPR027417 -
Seca4g01063 983 FunFam ATP-dependent Clp protease subunit 647 867 - -
Seca4g01063 983 Pfam ATPase family associated with various cellular activities (AAA) 297 431 IPR003959 GO:0005524|GO:0016887
Seca4g01063 983 Gene3D - 646 867 IPR027417 -
Seca4g01063 983 ProSiteProfiles Clp repeat (R) domain profile. 94 239 IPR004176 -
Seca4g01063 983 Coils Coil 505 525 - -
Seca4g01063 983 FunFam Chaperone protein ClpB3, chloroplastic 95 241 - -
Seca4g01063 983 Pfam Clp amino terminal domain, pathogenicity island component 187 238 IPR004176 -
Seca4g01063 983 Pfam Clp amino terminal domain, pathogenicity island component 110 161 IPR004176 -
Seca4g01063 983 NCBIfam ATP-dependent chaperone ClpB 99 952 IPR017730 GO:0005737|GO:0009408|GO:0042026
Seca4g01063 983 ProSitePatterns Chaperonins clpA/B signature 2. 728 746 IPR028299 -
Seca4g01063 983 FunFam ATP-dependent chaperone ClpB 436 641 - -
Seca4g01063 983 FunFam Chaperone clpB 1, putative 242 435 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01063 Seca-Chr4 17115288 17136068 Dispersed/Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01063 K03695 - gmx:100782242 1724.91