Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01058 ATGTCGATTTTACCGAAAGGCGATTCGGTTCAAATCAGGGAGGTTTGGAACGATAATCTAGAAGAAGAGTTTGCGTTGATCCGTGAAATCGTTGACGACTATAACTACGTAGCCATGGATACGGAGTTCCCTGGTGTGGTTCTTCGTCCTGTGGGTACTTTCAAGAACATCAATGACTATAACTATCAAACTTTGAAGGACAACGTTGACATGTTGAAGCTGATCCAATTGGGTCTCACTTTCTCCGATGAGAACGGAAACCTCCCTACATGTGGCACTGACAATTTTTGCATCTGGCAATTTAACTTTCGTGAGTTCAACATCAGCGAAGACATCTTCGCCAGTGATTCAATTGAGCTATTGCGTCAATGCGGGATTGATTTCAAGAAGAACAGTGAGAAGGGGATTGATGTGAACCGATTTGGTGAGCTTCTCATGTCATCAGGGATCGTATTGAACGATGGTGTGCACTGGGTCACATTCCACAGTGGTTATGATTTCGGTTACCTCCTTAAGCTGTTGACATGCAGAAGCTTACCTGATACACAAGCTGGATTCTTTGATTTGATCAAGATCTATTTCCCAATGGTTTATGATATCAAGCATTTGATGAAGTTCTGCAACAGTCTCCATGGTGGGTTGAACAAGCTTGCAGAGTTGTTGGATGTGGAGAGGGTTGGTGTGTGCCATCAAGCTGGATCAGATAGTTTACTCACTTCTTGTACATTTAGAAAGTTGAGGGATACATACTTCAATGGCTCAACAGAGAAGTATTCTGGTGTGTTGTATGGTTTAGGTGTTGAGAACGGACAGACTAATTGA 822 0.427 MSILPKGDSVQIREVWNDNLEEEFALIREIVDDYNYVAMDTEFPGVVLRPVGTFKNINDYNYQTLKDNVDMLKLIQLGLTFSDENGNLPTCGTDNFCIWQFNFREFNISEDIFASDSIELLRQCGIDFKKNSEKGIDVNRFGELLMSSGIVLNDGVHWVTFHSGYDFGYLLKLLTCRSLPDTQAGFFDLIKIYFPMVYDIKHLMKFCNSLHGGLNKLAELLDVERVGVCHQAGSDSLLTSCTFRKLRDTYFNGSTEKYSGVLYGLGVENGQTN. 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01058 273 Gene3D - 2 269 IPR036397 GO:0003676
Seca4g01058 273 FunFam Putative CCR4-associated factor 1 7 2 269 - -
Seca4g01058 273 PANTHER CCR4-NOT TRANSCRIPTION COMPLEX SUBUNIT 10 266 IPR039637 GO:0004535|GO:0030014
Seca4g01058 273 Pfam CAF1 family ribonuclease 15 136 IPR006941 -
Seca4g01058 273 SUPERFAMILY Ribonuclease H-like 12 265 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01058 Seca-Chr4 17076494 17078513 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01058 K12581 - gmx:100798365 540.036