Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01045 ATGAAAATGAAGCTTTTTCTTATCCTTCTCATGCTGCTTCTTGTTATTCACGAACCCATTTGGGTTCATGTCACTGCAGACCCTCCTGTTTCCTCACCTCAACTCACTCCATTTTCCACCTCCATGTCTACTTTTTCCCCAGGTACTGAGGTGAAGGAGGAGCACCACCAAAGAGATTTACACAAGAAAGTGGTAATAGCTCTTGTTGTAGCAAGCAGTGCACTTGGTACAATCATTTTGAGTTTGTTATGCTTCTGGGTATATAAAACCAAGTATGTGTCAAAATCCCATAGGAAAAATGTTCAAAGTTCAGGTCAAGATGCAGAGAAGGGGCTCCCTTTAGCACCATTTTTGAGTAAATTCAATTCCATCAAGTTGGTTGGTATGAAGGGGTCTGTTCCAATAATTGAATATGAACAAATAGAAAAATCCACAAATAATTTTGAGGAAGGTAACATCTTGGGTGAGGGTGGTTTTGGACGTGTTTACAAGGCTCGATTGGATGATAACTTGGATGTTGCCGTCAAGAAACTACGCTGTGAAAGTCAAAATGCTACCAGAGAATTTGAGATGAATTTGCAGAACGAGGTGGATTTGTTAAGTAAAATACAGCATCCAAATATAATTTCTTTACTGGGTTGTAGCATTGATGGCAGCACAAAGTTTATTGTGTATGAGTTGATGCAAAATGGGTCCTTGGAAGCTCAATTACATGGACCATCTCGTGGCTCAGCATTGACTTGGCATATGAGGATGAAGATTGCTCTTGACACTGCAAGAGGATTAGAATATCTGCATGAGCACTGTCACCCTGCAGTGATCCATAGAGATATGAAATCTTCTAATATTCTTTTAGATGCAAACTTCAATGCCAAGCTGTCTGATTTTGGTCTTGCAATAACTAATGGGTCCCAAAACAAGAACATTAAGCTTTCAGGAACCTTGGGGTATGTAGCCCCGGAGTATCTTCTGGATGGTATGCCAACTAAACTTGTTATCATTTACTGCATATGCATTGGTCTGACACGTTGCTACATGTTTAATGAGTTGTTAAGCTTTCAACAAACCTCATCCAAGATATTGTTTCTTTGGACCCTCATTGAATTCAATGACGTCATGAGTTTAGGGTGGGCCATGCCGCATCTCACTGATAGGTCCAAGATTCCACACATTGTGGATCCAGTGATTAAGGATACAATGGATCTCAAGCATTTATACCAGGTTGCTGCTGTAGCTGTGTTGTGCGTGCAACCAGAGTCAGGTTATCGCCCGCTGATCACAGATGTTCTTCACTCGCTTGTCCCTCTTGTTCCCGTTGAACTTGGAGGAACACTCAGAGTTTCACGAGTGACACAACATGTCTCTCTTGCTGATCCACCTCAAAATCCCAGTCATTGA 1398 0.4142 MKMKLFLILLMLLLVIHEPIWVHVTADPPVSSPQLTPFSTSMSTFSPGTEVKEEHHQRDLHKKVVIALVVASSALGTIILSLLCFWVYKTKYVSKSHRKNVQSSGQDAEKGLPLAPFLSKFNSIKLVGMKGSVPIIEYEQIEKSTNNFEEGNILGEGGFGRVYKARLDDNLDVAVKKLRCESQNATREFEMNLQNEVDLLSKIQHPNIISLLGCSIDGSTKFIVYELMQNGSLEAQLHGPSRGSALTWHMRMKIALDTARGLEYLHEHCHPAVIHRDMKSSNILLDANFNAKLSDFGLAITNGSQNKNIKLSGTLGYVAPEYLLDGMPTKLVIIYCICIGLTRCYMFNELLSFQQTSSKILFLWTLIEFNDVMSLGWAMPHLTDRSKIPHIVDPVIKDTMDLKHLYQVAAVAVLCVQPESGYRPLITDVLHSLVPLVPVELGGTLRVSRVTQHVSLADPPQNPSH. 466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01045 465 SMART serkin_6 148 434 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01045 465 SUPERFAMILY Protein kinase-like (PK-like) 126 433 IPR011009 -
Seca4g01045 465 Gene3D Transferase(Phosphotransferase) domain 1 228 438 - -
Seca4g01045 465 Gene3D Phosphorylase Kinase; domain 1 117 227 - -
Seca4g01045 465 FunFam probable receptor-like protein kinase At1g80640 228 438 - -
Seca4g01045 465 ProSitePatterns Serine/Threonine protein kinases active-site signature. 273 285 IPR008271 GO:0004672|GO:0006468
Seca4g01045 465 Pfam Protein kinase domain 148 357 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01045 465 ProSiteProfiles Protein kinase domain profile. 148 456 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g01045 465 PANTHER OS01G0750732 PROTEIN 33 437 - -
Seca4g01045 465 ProSitePatterns Protein kinases ATP-binding region signature. 154 177 IPR017441 GO:0005524
Seca4g01045 465 FunFam Protein kinase superfamily protein 115 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01045 Seca-Chr4 16735416 16738946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01045 26 335 Receptor kinase-like Gene Family AT1G80640 45.161 2.81e-81 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-X Seca4g01045 Pkinase 3.2e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01045 - - gmx:100784795 554.673