Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01029 ATGTCTTTCTTTTCCACTCTCCGTAGGTCCTCGCTGTTCGCCCAACGCTTCCGCACCCTCCACTCTTCCACTTCACAATCTCCTTCCTCTTCCAATCCACACCACAATCCGAAGTGGGCCTCATCGGTCTTTGTTGTGGGCTCTGCTATTACCCTTCTCTATTGCTTCGCTACACCCAATTCCCACTTCCACTCAAGCAATGACCCTCATAATTCTTCACGCTCACTGTTTAGAAAATTGTCCCTTCCTGAAAGTACTCATAACTTGATTTTTGGAGGCATCTCACTAAATACATTATATTTTGTTGCAGATGCGTACAGAAGTAAGGTTTTCTTCAACTATGAGAAGCGCATACGGTTGCACAGTCCACCGGAAAAGGTTTTTGAATACTTTGCATCTTGTCGTACTCCAGAAGGAAAATTATTCATGAAGCCAGCAGACCTAATGCGAGCCATTGTTCCTGTTTTCCCTCCATCTGAATCCAACCTTGTTAGAGATGGATACTTGAAAGGTGAAAGAAGTCCTGGCCAAATATGCTGTCCTCCTTCAGACTTTTTTATGCTTTTTGATGTGAACGGTGACCAGCTTATATCTTTCAAAGAGTATATCTTTTTTGTAACACTGCTTAGCATCCCTGAATCAAGCTTTTCAGCAGCATTTAAAATGTTTGACAAGGATAATGATGGGGAAATAGACGAGGAAGAATTCAAGAAAGTGATGGCATCAATGCGATGTCATACCAGACAAGGTGTTCACCACATGGATGGACAACGAACTGGCCTAAAGGCCAATGGATCTGTAGAGAATGGGGGGCTGGTGGAATACTTCTTTGGTAAAGATGGAAAAGGGCGCCTCAGACATGATAAATTTGTGCAGTTTATAAGAGATTTACATGATGAAATTCTGAGGCTGGAGTTTGCTCATTATGACTACAAATCTCAAAAAACCATATCAGCCAAGGATTTTGCACACTCCATAGTTGCTTCTGCTGACGCTAGTCATCTGGGCAGATTGCTTGAACGGGTTGATGAATTGAACAATGATCCACGGTTTAGGGATGAACGCATTACATTTGAGGAGTTCAAAAATTTTGCAGAGCTGAGGAAAAAATTATTACCATTTTCATCGGCCCTTTTCAGTTTTGCAAAAGTACATGGCCTGTTAACAAGAGATGATTTTCAACGAGCTGCATCACATGTTTGTGGTCTATCTCTCTCTGACAATGTGGTTGAGATTGTTTACCATTTGTTTGACACAAGTGGGGATGGAAACCTAAGTTCAGATGAGTTTGTTAAAGTGCTACACAGGCGAGAAAGAGATATTGCTCAACCTGTGGGGACAGGAATCCTGGGTTTCTTCTCATGCTGCTGGAACTGTACAGATACCTTCCCATATTCACGGTTGTTTTCCTAA 1413 0.4218 MSFFSTLRRSSLFAQRFRTLHSSTSQSPSSSNPHHNPKWASSVFVVGSAITLLYCFATPNSHFHSSNDPHNSSRSLFRKLSLPESTHNLIFGGISLNTLYFVADAYRSKVFFNYEKRIRLHSPPEKVFEYFASCRTPEGKLFMKPADLMRAIVPVFPPSESNLVRDGYLKGERSPGQICCPPSDFFMLFDVNGDQLISFKEYIFFVTLLSIPESSFSAAFKMFDKDNDGEIDEEEFKKVMASMRCHTRQGVHHMDGQRTGLKANGSVENGGLVEYFFGKDGKGRLRHDKFVQFIRDLHDEILRLEFAHYDYKSQKTISAKDFAHSIVASADASHLGRLLERVDELNNDPRFRDERITFEEFKNFAELRKKLLPFSSALFSFAKVHGLLTRDDFQRAASHVCGLSLSDNVVEIVYHLFDTSGDGNLSSDEFVKVLHRRERDIAQPVGTGILGFFSCCWNCTDTFPYSRLFS. 471
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01029 470 Gene3D - 385 444 - -
Seca4g01029 470 CDD EFh 186 241 IPR002048 GO:0005509
Seca4g01029 470 Gene3D - 265 383 - -
Seca4g01029 470 CDD EFh_MICU 216 437 - -
Seca4g01029 470 PANTHER EF HAND DOMAIN FAMILY A1,A2-RELATED 22 460 IPR039800 GO:0005509|GO:0006851
Seca4g01029 470 Pfam EF-hand domain pair 386 436 IPR002048 GO:0005509
Seca4g01029 470 SUPERFAMILY EF-hand 302 437 IPR011992 -
Seca4g01029 470 ProSitePatterns EF-hand calcium-binding domain. 224 236 IPR018247 -
Seca4g01029 470 Gene3D - 122 264 - -
Seca4g01029 470 SMART efh_1 181 209 IPR002048 GO:0005509
Seca4g01029 470 SMART efh_1 409 437 IPR002048 GO:0005509
Seca4g01029 470 SMART efh_1 215 243 IPR002048 GO:0005509
Seca4g01029 470 Pfam EF hand 217 243 IPR002048 GO:0005509
Seca4g01029 470 ProSiteProfiles EF-hand calcium-binding domain profile. 211 246 IPR002048 GO:0005509
Seca4g01029 470 SUPERFAMILY EF-hand 182 326 IPR011992 -
Seca4g01029 470 ProSitePatterns EF-hand calcium-binding domain. 418 430 IPR018247 -
Seca4g01029 470 ProSiteProfiles EF-hand calcium-binding domain profile. 405 440 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01029 Seca-Chr4 16392385 16396215 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01029 74 402 EF-hand Containing Proteins AT4G32060 67.173 7.77e-155 446
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01029 K22827 - gmx:100786375 730.324
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01029 4 16392385 16396215 Seca4g01029 4 16392385 16396215 ECH
Seca4g01029 4 16392385 16396215 Seca4g01029 4 16392385 16396215 PCT