Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01022 ATGGGTACTCTGTCTCTTTTGAAATGCTACAGACCCTTTTCCTCTATGGTTTTCCCCCACCCGGCTCATTCCACCATCTTCAGGAGGAAGAAGCTTCCTTCTTTTTGCGCCGTGTCATCCCAGCCGTTAACGACGGAGAAGAATTGCGACGGTGAGAGTTTCCGATTGAAGATTCCATCGCCGGCGCCGGAAGTGTGGCTGCACAACACCATGAGTAAAAAGAAGGAGCTTTTCAAACCCAAAGTGGAATCCAAAGTTGGAATGTACGTCTGCGGAGTCACCGCTTATGATCTCAGTCATATTGGGCATGCTCGCGTCTATGTTAATTTCGACCTTCTTTACAGATATTTTAAGCATTTGGGATTTGAAGTCTGTTATGTTCGCAATTTTACTGACGTAGATGACAAGATAATTGCTAGAGCAAAGGAGTTTGGAGAAGATCCGATTAGCTTGAGCCGGCGCTATTGTGAAGAGTTCCGTCAAGACATGGTAACTCTTAATTGTTTGCCTCCTTCTGTGGAACCTAAAGTCTCAGAGCACATGCCCCAAATCATTGATATGATTGAGAAGATTCTTAGTAATGGGTATGCCTACGTTGTTGATGGGGATGTATACTTTAATGTAGAAAAATTTCCAGAATATGGGAAGTTATCTAGTCGAGATCTAGAAGATAACCGAGCTGGTGAGAGGGTTGCTGTTGATTCAAGGAAGAAAAATCCTGCTGATTTTGCTCTTTGGAAGTCTGCAAAGCCAGGAGAACCATTTTGGGAGAGTCCCTGGGGTCCTGGAAGACCTGGGTGGCATATTGAATGCAGTGCTATGAGTGCAGCATATCTTGGTTACTCTTTTGATATCCATGGTGGAGGGATTGACCTTGTGTTTCCTCACCATGAAAATGAAATTGCTCAGAGTTGTGCTGCTTGTAAGGAAAGTGATATAAGCCTATGGATGCACAATGGTTTTGTCACCATTGACTCTGTAAAGATGTCTAAATCTCTCGGGAATTTTTTCACAATACGGCAGGTTGTAGATGTTTACCATCCACTGGCTTTGAGATATTTTTTGATGGGCGCTCATTATAGATCTCCTATTAATTACTCTGATATACAGCTTGAAAGTGCTTCAGACCGTGTTTTTTATATATATGAGGTACTACTTTCTGCCTTCTTGAAAATTATGTGTTTGCAGACACTGCATGAATGTGAAAGCTTTCTGAATCAGCACGATGATCAGACATTTCGGAAGGATTCCGTCCCACCAGATACTAAGAGTATTATTGATAATTTCCATGATGTTTTTCTGGCATCAATGTCTGATGATCTTCACACTCCGGTTGTATTGGCTGGACTGTCTGACCCATTAAAATCAATTAATGACTTGCTGCATACTCGTAAGGGGAAAAAACAACAATTTCGAGTAGAAACGCTTTCAGCTTTGAAGAAGAGCATCGAGGATGTCCTTACTGTTTTAGGACTTATGCCTTCAACTTATTCTGAGGTTTTGCAGCAGCTTAAAGAAAAAGCTTTAAAGCGTGCAAACTTGACAGAAGATGAAGTCTTGCAGAAAATTGAAGAGAGGGCTGCTGCTAGAATACAAAAGGAGTATGCCAAATCAGATGCAATAAGGAAGGATTTGGCTGTTGTTGGTATTACACTTATGGACAGTCCAAATGGCACAACTTGGAGGCCTGCCATTCCTCTTCCACTTCAAGAGCTCCTCAGTTCCAAATAA 1731 0.42 MGTLSLLKCYRPFSSMVFPHPAHSTIFRRKKLPSFCAVSSQPLTTEKNCDGESFRLKIPSPAPEVWLHNTMSKKKELFKPKVESKVGMYVCGVTAYDLSHIGHARVYVNFDLLYRYFKHLGFEVCYVRNFTDVDDKIIARAKEFGEDPISLSRRYCEEFRQDMVTLNCLPPSVEPKVSEHMPQIIDMIEKILSNGYAYVVDGDVYFNVEKFPEYGKLSSRDLEDNRAGERVAVDSRKKNPADFALWKSAKPGEPFWESPWGPGRPGWHIECSAMSAAYLGYSFDIHGGGIDLVFPHHENEIAQSCAACKESDISLWMHNGFVTIDSVKMSKSLGNFFTIRQVVDVYHPLALRYFLMGAHYRSPINYSDIQLESASDRVFYIYEVLLSAFLKIMCLQTLHECESFLNQHDDQTFRKDSVPPDTKSIIDNFHDVFLASMSDDLHTPVVLAGLSDPLKSINDLLHTRKGKKQQFRVETLSALKKSIEDVLTVLGLMPSTYSEVLQQLKEKALKRANLTEDEVLQKIEERAAARIQKEYAKSDAIRKDLAVVGITLMDSPNGTTWRPAIPLPLQELLSSK. 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01022 576 PANTHER CYSTEINYL-TRNA SYNTHETASE 63 568 IPR024909 -
Seca4g01022 576 SUPERFAMILY Nucleotidylyl transferase 65 373 - -
Seca4g01022 576 FunFam Cysteine--tRNA ligase 64 365 - -
Seca4g01022 576 Gene3D - 392 563 - -
Seca4g01022 576 CDD CysRS_core 66 367 IPR032678 -
Seca4g01022 576 SUPERFAMILY Anticodon-binding domain of a subclass of class I aminoacyl-tRNA synthetases 418 562 IPR009080 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Seca4g01022 576 Hamap Cysteine--tRNA ligase [cysS]. 65 564 IPR015803 GO:0004817|GO:0005524|GO:0006423
Seca4g01022 576 PRINTS Cysteinyl-tRNA synthetase signature 88 99 IPR024909 -
Seca4g01022 576 PRINTS Cysteinyl-tRNA synthetase signature 253 271 IPR024909 -
Seca4g01022 576 PRINTS Cysteinyl-tRNA synthetase signature 284 305 IPR024909 -
Seca4g01022 576 PRINTS Cysteinyl-tRNA synthetase signature 124 133 IPR024909 -
Seca4g01022 576 Pfam tRNA synthetases class I (C) catalytic domain 78 374 IPR032678 -
Seca4g01022 576 NCBIfam cysteine--tRNA ligase 67 562 IPR015803 GO:0004817|GO:0005524|GO:0006423
Seca4g01022 576 Gene3D HUPs 52 367 IPR014729 -
Seca4g01022 576 FunFam Cysteine--tRNA ligase CPS1, chloroplastic/mitochondrial 367 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01022 Seca-Chr4 16322434 16327241 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01022 K01883 - gmx:100786700 1012.68