Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01011 ATGAAGCACACTTCGTCTGAGGCAGTTCCTTCTCTTTCTTCCGCGCCATCGTTCACGGACCAATCGCAGGCCGCCACATCATCATCGTCGTCGTCAGCAGCGGCGGAGGACCTAGCCATGGGGTCGAGGGATGGAGGCGGTGCTCAGGAGACGGTGGTCGTGGATCGACGAGGCGAGTACTCCGCCGTGTGCCGATGGACGGTGCACAATTTCCCGAGAATAAAAGCTAGGGCACTGTGGAGCAAGTACTTCGAGGTAGGAGGTTACGATTGTCGCCTCTTGATATACCCTAAGGGTGACTCACAGGCTCTTCCAGGTTACATCTCTATCTACCTCCAAATCATGGACCCTCGCGGCACTTCTTCCTCCAAATGGGACTGCTTCGCTAGTTATCGCTTGGCAATCGTCAACGTCGCCGACGATTCGAAGAGCATTCATCGCGATTCCTGGCACAGGTTCTCCAGTAAGAAGAAATCGCATGGTTGGTGTGATTTCACGCCTTCTTCCACTGTTTTTGATCCCAAATTGGGTTATTTGTTCCAAAACGATTCCGTATTGATCACTGCTGATATCCTTATTCTTAATGAGTCCGTTAATTTCACTCGCGATAACAATGAGTTGCTGTCCTCGTCGTCGTCTTCTTCCTTGTCATCGTCTTCCTCTGTGGTTGCGGGCCCTGTGTCTGATGTTTTGAGTGGGAAGTTCACCTGGAAAGTGCACAATTTCAGTTTGTTCAAGGAGATGATCAAGACGCAGAAGATAATGAGCCCGGTTTTCCCTGCTGGGGAGTGTAATTTGAGGATTAGTGTGTACCAGAGCTCGGTGAATGGGGTTGAGTATCTGTCAATGTGTTTGGAAAGCAAGGATACCGATAAAACTGTGGTGTTGTCTGATAGGAGTTGCTGGTGTTTGTTTAGGATGTCTGTCTTGAACCAAAAGCCCGGTTCAAATCATATGCATAGGGATTCCTATGGGCGGTTTGCGGCTGATAATAAGAGTGGTGACAATACTAGCTTGGGATGGAATGATTATATGAAGATGTCTGATTTTATTGGGCCTGATTCAGGGTTCTTAGTGGATGACACTGCGGTTTTTAGTACCTCATTTCATGTGATCAAAGAGTTTAGCAGCTTCTCCAAGAATGGGGCTGTAATTTCTGGGAGAAGTGGGAGTGGTGCAAGGAAGTCAGATGGCCACATTGGAAAGTTCACATGGAGGATTGAGAATTTTACAAGGTTAAAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTTTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATAGGGATTGTCGCCTTATTGTGTATCCCAGAGGGCAGTCTCAACCACCATGCCATCTTTCAGTGTTTCTTGAAGTTACCGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTTAGTCATCGTTTGTCAGTTGTGAACCAGAGGATGGAGGATAAATCTGTCACCAAGGAATCTCAGAATCGCTACTCCAAAGCTGCAAAGGATTGGGGCTGGCGTGAATTTGTGACACTTACAAGTCTCTTTGATCAAGATTCAGGTTTTCTTGTCCAGGACACTGTCATATTCTCAGCTGAAGTTCTTATATTGAAAGAGACATCAATAATGCAGGATTTCACTGAGCATGATTCTGAGCTAAGCAGCAGTGGTTCCCTTATTGATAGTTATGGGAAAAGAAGTTCTTTTACATGGAAAGTGGAAAATTTCCTGTCTTTTAAGGAAATAATGGAGACTCGAAAAATCTTCAGTAAATTCTTTCAGGCTGGTGGTTGTGAACTTCGCATTGGTGTGTATGAGTCCTTTGATACCATATGTATCTATTTGGAGAGTGACCAGGCCGTTGGTAGTGATCCTGATAAAAACTTCTGGGTCAGATACAGGATGGCTGTTGTGAATCAAAAGAACCCAGCTAAGACAGCGTGGAAAGAATCTTCTATCTGCACGAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTGTCTGATATGTTAGAAGCTGATGCAGGGTTTCTCGTCCGTGACACTGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGACTTAGAGGTTTTAGCTTCAGAGGATGATCAGGATGCGTTGACAACTGATCCTGATGAACTGATCGACTCAGAAGATAGTGAAGGGATTAGTGGGGATGAGGAAGATATTTTTAGAAACCTTCTTTCCCGAGCTGGATTTCATTTAACATATGGAGATAATCCTTCACAGCCTCAGGTTACTTTAAGAGAGAAACTTTTAATGGATGCTGGTGCAATTGCTGGGTTTCTGACTGGACTTCGGGTTTATCTTGATGATCCTGCAAAAGTGAAGCGTTTGCTTTTACCTACCAAGCTCTCTGGTAATTGTGATGGGAAAAAGACCACCAAGGCTGATGAGTCTTCCCCAAGTTTGATGAATTTGCTGATGGGAGTTAAAGTATTGCAGCAAGCAATCATTGATTTACTATTGGATATAATGGTTGAGTGCTGCCAACCTTCTGAAGTGGGTCCTGTTGCTGATTCTGTTGATGCATGCTCAAAACCTTCTCCAGACAGCAGTGGAGCTGCTAGTCCTCTTGAATGTGATAGAGAAAATAGAGCAATGGAGTCTGCACAAGTTCCTGTTTATGAGAGATTGGACTCTGTTGTTGAAGAAAGCAGTAGTACATCTGCTGTACAGAGCTCTGATTTAAACGGTAATACTATTCAGGAAAAAGCTCTTCCTGGACAGCCTATTTGTCCACCAGAAACATCTGCCACTGGTTCGGATAATGCATCCTTTCGGTCAAAGGTACAAATTTGTATCCATAAGAGGTAA 2865 0.4426 MKHTSSEAVPSLSSAPSFTDQSQAATSSSSSSAAAEDLAMGSRDGGGAQETVVVDRRGEYSAVCRWTVHNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIMDPRGTSSSKWDCFASYRLAIVNVADDSKSIHRDSWHRFSSKKKSHGWCDFTPSSTVFDPKLGYLFQNDSVLITADILILNESVNFTRDNNELLSSSSSSSLSSSSSVVAGPVSDVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGVEYLSMCLESKDTDKTVVLSDRSCWCLFRMSVLNQKPGSNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFIGPDSGFLVDDTAVFSTSFHVIKEFSSFSKNGAVISGRSGSGARKSDGHIGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQIGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQRMEDKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSIMQDFTEHDSELSSSGSLIDSYGKRSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQAVGSDPDKNFWVRYRMAVVNQKNPAKTAWKESSICTKTWNNSVLQFMKVSDMLEADAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSRAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGNCDGKKTTKADESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEVGPVADSVDACSKPSPDSSGAASPLECDRENRAMESAQVPVYERLDSVVEESSSTSAVQSSDLNGNTIQEKALPGQPICPPETSATGSDNASFRSKVQICIHKR. 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01011 954 MobiDBLite consensus disorder prediction 902 921 - -
Seca4g01011 954 MobiDBLite consensus disorder prediction 1 47 - -
Seca4g01011 954 CDD MATH 65 191 IPR002083 GO:0005515
Seca4g01011 954 Pfam MATH domain 581 688 IPR002083 GO:0005515
Seca4g01011 954 Pfam MATH domain 70 193 IPR002083 GO:0005515
Seca4g01011 954 Pfam MATH domain 431 538 IPR002083 GO:0005515
Seca4g01011 954 CDD MATH 570 692 IPR002083 GO:0005515
Seca4g01011 954 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 560 694 IPR008974 GO:0005515
Seca4g01011 954 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 47 198 IPR008974 GO:0005515
Seca4g01011 954 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 392 545 IPR008974 GO:0005515
Seca4g01011 954 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 228 376 IPR008974 GO:0005515
Seca4g01011 954 SUPERFAMILY TRAF domain-like 569 693 - -
Seca4g01011 954 SUPERFAMILY TRAF domain-like 60 199 - -
Seca4g01011 954 SMART math_3 405 517 IPR002083 GO:0005515
Seca4g01011 954 SMART math_3 237 350 IPR002083 GO:0005515
Seca4g01011 954 SMART math_3 573 673 IPR002083 GO:0005515
Seca4g01011 954 SMART math_3 63 171 IPR002083 GO:0005515
Seca4g01011 954 ProSiteProfiles MATH/TRAF domain profile. 232 369 IPR002083 GO:0005515
Seca4g01011 954 PANTHER TRAF-LIKE FAMILY PROTEIN 25 946 - -
Seca4g01011 954 ProSiteProfiles MATH/TRAF domain profile. 61 191 IPR002083 GO:0005515
Seca4g01011 954 MobiDBLite consensus disorder prediction 1 36 - -
Seca4g01011 954 SUPERFAMILY TRAF domain-like 401 542 - -
Seca4g01011 954 CDD MATH 233 365 IPR002083 GO:0005515
Seca4g01011 954 CDD MATH 401 536 IPR002083 GO:0005515
Seca4g01011 954 ProSiteProfiles MATH/TRAF domain profile. 400 536 IPR002083 GO:0005515
Seca4g01011 954 SUPERFAMILY TRAF domain-like 230 375 - -
Seca4g01011 954 MobiDBLite consensus disorder prediction 902 942 - -
Seca4g01011 954 ProSiteProfiles MATH/TRAF domain profile. 568 692 IPR002083 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01011 Seca-Chr4 16228653 16238163 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01011 - - gmx:100788511 1719.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01011 4 16228653 16238163 Seca4g01011 4 16228653 16238163 ECH