Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g01009 ATGGCTTCCAACAAACTCATTGCCACCATTTTGGTGCTTTCTCTCCTTGCTTACTCAACATTCACCGAGGCTAATTGCCCACCACCAACGCCTGCACCCAAGCCCACACCAAAGCCCACACCCAAGCCTTGTCCTACACCACCAACCCCAGCTGAAAAATGCCCCAAAGACACCTTAAAGCTAGGGGTTTGTGCTGATGTTTTAGGACTTGTTAACGTTATTGTTGGAACTCCTCCTTCAAGCAAATGTTGTGCATTGATCCAGGGTTTGGCTGATTTGGAGGCTGCACTTTGCTTATGCACTGCAATTAAGGCCAATGTGCTTGGAATAAACTTGAACGTACCTATCACGCTCAGCTTGATCCTTAGTGCATGTCAAAAAACAGTGCCTCCTGGTTTCCAATGTGCCTAG 411 0.4745 MASNKLIATILVLSLLAYSTFTEANCPPPTPAPKPTPKPTPKPCPTPPTPAEKCPKDTLKLGVCADVLGLVNVIVGTPPSSKCCALIQGLADLEAALCLCTAIKANVLGINLNVPITLSLILSACQKTVPPGFQCA. 137
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g01009 136 PANTHER - 6 135 - -
Seca4g01009 136 Gene3D - 51 136 IPR036312 -
Seca4g01009 136 SMART aai_6 54 135 IPR016140 -
Seca4g01009 136 MobiDBLite consensus disorder prediction 27 52 - -
Seca4g01009 136 Pfam Hydrophobic seed protein 54 136 IPR027923 -
Seca4g01009 136 SUPERFAMILY Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin 57 135 IPR036312 -
Seca4g01009 136 CDD HPS_like 53 135 IPR027923 -
Seca4g01009 136 FunFam pEARLI1-like lipid transfer protein 1 52 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g01009 Seca-Chr4 16207865 16208275 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g01009 45 135 Acyl Lipid Metabolism Gene Families AT4G22490 39.785 1.58e-17 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g01009 - - gmx:547594 186.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g01009 4 16207865 16208275 Seca4g01009 4 16207865 16208275 ECH
Seca4g01009 4 16207865 16208275 Seca4g01009 4 16207865 16208275 PCT