Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00982 ATGTCTAAAGTCTTCAGTTTTACCGGAAGTGATGATTTTTACCCTGGGGGGTCAATATACCCTAATCCCAAGGAAGCAAGTCTCTTCTTGTCTCTTGGCCGTCCAGTTGATGCTTACTTTCCTCTTCAGAAGCGGTCTCGCATCAGTGTTCCATTGGATATCAGTGGAGAATGGTTTGAGAAGAAGCCGAAGACATCTATTGAAACTTTGCCAGATGAATGCCTCTTTGAGATCCTTAGAAGGTTGCCTGCAGGCCAAGATAGGAGTACATGTTCTCTTGTATCAAAGCGCTGGCTTATGCTTCTAAGCAATATTTGTAAGAGTGAAATCTGCAGCAATGTGAGTGCCAAAAATGAAAATGATGATGATGATCAGGAATTTGAAGATGAAGGATTCCTCTCTCGAAGCTTGGAGGGAAAAAAGGCAACAGATGTTAGACTTGCTGCCATTGCTGTTGGAACAGCATCTCGAGGAGGATTGGGGAAGCTTTCAATTCGCGGATGCAATTCAGATCGTGGGGTCACTGATGTCGGTCTCAAGGCAATTGCTCATGGATGTCCTTCTCTAAAGGCTTTGTCTTTATGGGAGCTTGCTACCATTAGTGATGAAGGCCTGATTGAGATTGCTAGTGGGTGTCACCTGTTAGAGAGGCTTGACCTTTGCAACTGCCCCAAAATTACTGACAAGGCCTTAATTGCAGTTGCGAAGAACTGCCCAAATCTGACTGACTTATCAATAGAGTCATGTCCTAACATTGGTAATGAAGGCCTACAAGCTATTGGGAAGTTGTGTCCCAATCTAAGGTCTGTATCAATTAAGGACTGCTCCGGAGTTGGTGACCAGGGGATTGCTGGCCTGTTATCTCCGACTTCTTTTGTTCTAACTAAGGTGAAGCTTGAGTCGCTAGCTGTTTCCGATCTCTCACTAGCAGTTATTGGGCATTATGGTTTTGCAGTTACTGATCTTGTCCTAAATTGCCTCCCAAATGTCAGCGAGAAGGGATTCTGGGTTATGGGTAATAGTCGTGGACTGCAGAAACTAACGTCACTCACAATTGGATACTGCCGAGGAGTAACAGATATTGGGCTTGAAGCTATAGCAAAGGGTTGTCCAAATGTGCAAAACTTTGAACTTCGCAAGTGTGCATTTCTGTCAGACAATGGGTTGGTATCATTCGCCAAGGCTGCTCCATCACTTGTGAGCCTAGAATTGGAAGAGTGCCACAGAATTACCCAATTTGGGTTTTTTGGTCTTCTTATTAACTGTGGTGCAAAACTGAAGGATCTCACTCTGGAAAGATGCTATGGGATCAAGGATCTAAATCTGGAATTGCCAGCAGTATCTCCTTGCGAATCAATTTGTGCAGTATCAATCCGTGACTGCCCAGGATTTGGGAATGGTTCCCTTGCTGCACTGGGAAAGCTGTGCCCTCAGCTTCAGCATGTTGAATTGAATGGACTCGAGGGAATCACAGATGCAGGGTTTCTTTCACTGGTTGAGAGGTCTGAGGCTGGTTTGGTTAAAGTTAATCTAAGCGGTTGCGTTAATCTGTCAGACACAGGGGTTTTGTCCATGGTCAAGTTGCATGGATGTTCTCTTGAAGTGCTAAACCTCAATGGTTGTAAAAAAGTCAGTGATGCTAGCTTGATGGCAATTGCAGGCAATTGCTCATTACTCTCTGATCTTGATGTTTCCAAATGTGCAATCACTGATTCCGGGATCACCGCCCTTGCACATGGGAACCAGTTCAATCTGGAGATACTTTCTTTGTCAGGTTGCTCAATGGTTTCAGGCAAGAGCATGCGAGCTTTGAAGAATTTGAGTGATACCCTTGAGGGATTAAATATCCGTCATTGCAATAGAATCAGCAGCCGTACAGTTGACATGCTTCTAGATCATCTCTGGAGGTATCTTTCTTTTGTGGTGTTGGCACCTGATGTTTTTAGCTCTGCTTTGCTTTGTATCAGTTTTGCCACCATGTGTGTCCTTGTCCTGGTTTCTTTACCAAAGTCTGTCCAGTGGTGTTTACCTCATTTTTCACTTCAGAGAGTTATGATGCCTAATGTCTTCAAGGGCTTTGGCCATGGCAGCAAGTTATACAGGTTCAGCCTGGATGGACCCACTAGGAAATTTGCAATATACGGTGGTTATGGCTTTGGTAGGAAAACCAAATAA 2175 0.4432 MSKVFSFTGSDDFYPGGSIYPNPKEASLFLSLGRPVDAYFPLQKRSRISVPLDISGEWFEKKPKTSIETLPDECLFEILRRLPAGQDRSTCSLVSKRWLMLLSNICKSEICSNVSAKNENDDDDQEFEDEGFLSRSLEGKKATDVRLAAIAVGTASRGGLGKLSIRGCNSDRGVTDVGLKAIAHGCPSLKALSLWELATISDEGLIEIASGCHLLERLDLCNCPKITDKALIAVAKNCPNLTDLSIESCPNIGNEGLQAIGKLCPNLRSVSIKDCSGVGDQGIAGLLSPTSFVLTKVKLESLAVSDLSLAVIGHYGFAVTDLVLNCLPNVSEKGFWVMGNSRGLQKLTSLTIGYCRGVTDIGLEAIAKGCPNVQNFELRKCAFLSDNGLVSFAKAAPSLVSLELEECHRITQFGFFGLLINCGAKLKDLTLERCYGIKDLNLELPAVSPCESICAVSIRDCPGFGNGSLAALGKLCPQLQHVELNGLEGITDAGFLSLVERSEAGLVKVNLSGCVNLSDTGVLSMVKLHGCSLEVLNLNGCKKVSDASLMAIAGNCSLLSDLDVSKCAITDSGITALAHGNQFNLEILSLSGCSMVSGKSMRALKNLSDTLEGLNIRHCNRISSRTVDMLLDHLWRYLSFVVLAPDVFSSALLCISFATMCVLVLVSLPKSVQWCLPHFSLQRVMMPNVFKGFGHGSKLYRFSLDGPTRKFAIYGGYGFGRKTK. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00982 724 CDD F-box_AtTIR1-like 70 101 - -
Seca4g00982 724 FunFam EIN3-binding F-box protein 1 132 250 - -
Seca4g00982 724 Gene3D Ribonuclease Inhibitor 445 502 IPR032675 -
Seca4g00982 724 FunFam EIN3-binding F-box protein 1 66 103 - -
Seca4g00982 724 Pfam Leucine Rich repeat 531 553 IPR001611 GO:0005515
Seca4g00982 724 Pfam Leucine Rich repeat 237 260 IPR001611 GO:0005515
Seca4g00982 724 Pfam Leucine Rich repeat 556 578 IPR001611 GO:0005515
Seca4g00982 724 Pfam Leucine Rich repeat 345 367 IPR001611 GO:0005515
Seca4g00982 724 SUPERFAMILY F-box domain 62 109 IPR036047 GO:0005515
Seca4g00982 724 SMART fbox_2 70 111 IPR001810 GO:0005515
Seca4g00982 724 PANTHER UNCHARACTERIZED 346 630 - -
Seca4g00982 724 SUPERFAMILY RNI-like 299 638 - -
Seca4g00982 724 FunFam EIN3-binding F-box protein 1 251 441 - -
Seca4g00982 724 Gene3D Ribonuclease Inhibitor 503 668 IPR032675 -
Seca4g00982 724 ProSiteProfiles F-box domain profile. 64 114 IPR001810 GO:0005515
Seca4g00982 724 FunFam EIN3-binding F-box protein 1 501 638 - -
Seca4g00982 724 Pfam F-box-like 67 101 IPR001810 GO:0005515
Seca4g00982 724 Gene3D Ribonuclease Inhibitor 60 291 IPR032675 -
Seca4g00982 724 Gene3D Ribonuclease Inhibitor 292 444 IPR032675 -
Seca4g00982 724 SMART LRR_CC_2 582 607 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 212 237 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 264 289 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 476 501 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 450 475 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 238 263 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 370 395 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 157 185 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 344 369 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 530 555 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 186 211 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 556 580 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 608 633 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 503 528 IPR006553 -
Seca4g00982 724 SMART LRR_CC_2 396 421 IPR006553 -
Seca4g00982 724 SUPERFAMILY RNI-like 160 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00982 Seca-Chr4 15823415 15827759 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00982 K14515 - gmx:100805418 998.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00982 4 15823415 15827759 Seca4g00982 4 15823415 15827759 ECH
Seca4g00982 4 15823415 15827759 Seca4g00982 4 15823415 15827759 PCT