Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00971 ATGGATTTTTTGTATGGTCAAATTGATCAGAACACTGCACTATTTGTAGATTCTGCTATTGAGAATATGGATCTAGAAGGAAGTGAAAAGGATTCAGTGGTTACTCAAATTAGCATTGGTGGATTTGACAGTGAAGTTACGGCAAATGACCTTGTGACATTCTTGGAAGATAAAATTGGGCTTGTATACAGGTGTCGGCTGAAAACTTCTTGGACACCTCCAGAGTCTTATCCAGAATTTAATATCACTGATACTGCACAGATTAAAAGAACAGATGACTATAAGAGGGTGGAGCCCCATGCCTTTGTGCATTTTGCAATGGAAGAAGCTGTAACTGATGCCCTCAATGCTTCAGGTTGTTGTGATCTATTTTTGAAGAATCAACCATTAACGGTCATCTGTGGGCCTCAGAATCCACACTTCCTGAATAAAAGGAGGAGAACTACAACTCCTTTTAAGCTGTCTGATGTACTTGTTGAAATTGGGACTTTGGTTAGCCCAGAGGAATTTATTGTTGCTTGGAGAGGACCTGATAAAGGGGTAAACTTTCTAGTGGATCCTTTTGATGACATGTGCAAGCTTTGTTTCAACAGAGATACTGCATTCTCGTTCAAAGGAATAGGAAAAAAGGCAGTGATAAAGTGTGATTTTAAAGTGGGATTCTTGGTCAGAGACATAAATGAGATCTGGAGATATGATGATACATCATATCTTGTTGTTTTACTGCAACTAGCTTCATCACCTTTGGTTTGGTACAGAACTGCTGATGATGACATTGAAGAATCAGTCACATTTGATTTGCTGGATGATGATGATCCTTGGATCAGGACCACTGATTTTACACCTAATGGGTCCATTGGTAGATGCAATTTTTATAGAATTTCAATCCCACCTCGCCATGGTGCAAAATTGATGAAGGCCATGCATTATCTGAAAGGTCAAAGAGTACAAGTGGTTCCACTTAAACGGCCACTCAGGATACTGGATGAACCTGATTTTGGGGTGCCAATGTCAGATGCTTTCTTCTATATTCAATCTCGGAAGGGAATTACTTTTGACACAATGTTCTTGATTAATGCAATCATCCACAAAGGTATATTCAATCAGTACAGTTTATCAGATAGGTTTTTTGATTTGCTGAGAAATCAACCAGAGGAGGTAAATGTGGCTGCCTTGAAGCACTTATGTTCGTACAAGCGCCCAGTGTTTGATGCAGCCAAGAGGCTTAAAACAGTACAAGAATGGTTACTCCGAAATCCGAAACTTTATCAGATCTCCAAACAGTTAGATGATATTGTAGAGGTTAGAAGACTGGTTATCACTCCAACAAAAGCCTATAGTATACCACCAGAAGTTGAATTGTCCAACAGGGTTCTCAGAAGATTTAGAGAAGCTTCAGATCGTTTCTTGAGAGTCACCTTTATGGATGAAGGCATGCAGACAATGAATGTGAATGCTCTTAACTATTATGTTGCTCCCATAGTGAAGGAAATCACATCGAACTCCTTTCCACAGAAGACAAAAATATATAATAGGGTGAAGACTATCCTGGAAGAGGGATTTTACTTTTGTGGCCGGAAATATTCATTTTTGGCTTTTTCATCAAATCAACTTAGAGATCGTTCTGCTTGGTTTTTTGCTGAACACAAGAAGATAAATTGTGATGATATTAGATGTTGGATGGGTAAGTTTAATCAGAAGAATGTTGCAAAATGTGCTGCTAGGATGGGCCAATGCTTTTCATCTACTTATGCAACGGTGGAAGTTGGTGCAAATGAAGTTAACTCCATGCTACCTGATGTTGAGAGGAATAATTATGTTTTCTCTGATGGTATTGGTATTATCACTCCTGATCTTGCAGGTGAAGTTGCAGAAAAATTGAAATTGGACAGCATACCCTCTGCTTACCAGATCAGATATGCTGGTTTTAAAGGGGTTGTAGCCTGTTGGCCTGCTAAAGGGGATGGGTATAGGCTTTCTTTGAGGCCTAGCATGAATAAGTTTGAATCTACTCATACCACCTTGGAAATCTGTTCTTGGACCAGGTTTCAGCCTGGTTTTCTTAACCGACAGATTATAACATTGCTTTCAGCACTGGAAGTGTCTGATGATATATTCTGGAAAATGCAGGAGGGAATGCTTTCAAGGTTAAATCAAATGCTTGTGGATGCAGATGTGGCCTTTGATGTTCTTATGAAGTCCTGTGCTGAGCATGGAAATGCTGCAGCAATAATGTTAAGTTGTGGTTTCAGTCCCCAAACAGAACCTCATCTCAGAGGTATGTTAACTTCTATACGTGCTGCGCAGCTTTGGGGCCTTAGGGAAAAGTCTAGGATTTTTGTTTTGTCTGGCCAATGGTTGATGGGTGTCTTCGACGAGTTGGGTGTGCTGGAACAAGGGCAGTGCTTTGTTCAAGTGTCTACTCCTTCTCTTGAAAATTGTTTCTCAAAGCATGGGTCAAGATTTTCTGAGACAAAGAACCTGCAAGTGGTTAAAGGTCTTGTGGTTATAGCCAAAAATCCATGTCTTCACCCTGGAGATGTAAGAGTTTTGGAGGCAGTTGATGTCCCTGATTTACATCATTTACATGATTGTCTTGTTTTCCCTCAAAAGGGTGACAGACCCCATACAAATGAAGCTTCTGGAAGTGACCTGGACGGGGATCTATATTTTGTCACATGGGATGAAAATCTTATTCCACCTAGTAAGAGGAGCTGGATACCTATGGAGTACACTCCTCAAGAAAGCAAACTTCAGGCACGCCAAGTCACTATCCAGCACATCATAGATTTTTTTGTCAGAAATATGGTGAATGAGCATTTGGGTGCAATCTGCAATGCACATGTGGTACATGCTGATTGCAGTGACTATGGCGCCTTGGATGAGAAATGCATAACCTTGGCTGAGTTAGCAGCCACTGCCGTTGATTTTCCAAAGACCGGGAAGCTTGTCACTATGCCTCCTCGTCTGAAACCAAAACTGTACCCAGATTTTATGGGGAAAGAGCAGCACCAGTCTTACAAGTCCACAAAAATCCTGGGCAGACTTTATCGGCGGATCAAAGATGCTTATGATGAAGATATTGGTGATCCTGATTTGAACTATGTGACAGGTGATATACCTTATGATACAGATCTCGAGGTTCAGGGATCTGCTGATTTTATTGCTGATGCGTGGGAACATAAGTGCTCTTATGATGGCCAGTTGAGTGCACTACTAGGTCAATACAAGGTGAAAAGAGAAGAAGAAGTTGTCACTGGACAAATCTGGTCCATGCCAAAATACAACAGTAGGAAGCAAGGGGAACTTAAGGAGAGGCTGAAGCACTCATATAGTGCCCTGAAAAAAGAATTTAGGCAAATTTTTGAGAAATTGAATTCAGATGTAGGAGAATTAAGCGATGAAGAAAAAAATTCATTGTATGAGCAGAAAGCCTCAGCCTGGTATCAGGTGACATATCATCCTAAATGGGTGAAAAAATCCCTTGATCTTCAAGATAAATTCCCATTAAACCAAGAGCCAGGTAGTTCGGGAACAACAGTGATGTTGAGTTTTCCTTGGATTACAGTTGATTACCTAGCTCGCACAAAGATAAGGCGTCGGAAATTTGGAAATTTTGATTCAACAAAGCCAATTGATTCTCTGGCAAAGTTTCTATCTGAAAGGTTATAA 3672 0.4047 MDFLYGQIDQNTALFVDSAIENMDLEGSEKDSVVTQISIGGFDSEVTANDLVTFLEDKIGLVYRCRLKTSWTPPESYPEFNITDTAQIKRTDDYKRVEPHAFVHFAMEEAVTDALNASGCCDLFLKNQPLTVICGPQNPHFLNKRRRTTTPFKLSDVLVEIGTLVSPEEFIVAWRGPDKGVNFLVDPFDDMCKLCFNRDTAFSFKGIGKKAVIKCDFKVGFLVRDINEIWRYDDTSYLVVLLQLASSPLVWYRTADDDIEESVTFDLLDDDDPWIRTTDFTPNGSIGRCNFYRISIPPRHGAKLMKAMHYLKGQRVQVVPLKRPLRILDEPDFGVPMSDAFFYIQSRKGITFDTMFLINAIIHKGIFNQYSLSDRFFDLLRNQPEEVNVAALKHLCSYKRPVFDAAKRLKTVQEWLLRNPKLYQISKQLDDIVEVRRLVITPTKAYSIPPEVELSNRVLRRFREASDRFLRVTFMDEGMQTMNVNALNYYVAPIVKEITSNSFPQKTKIYNRVKTILEEGFYFCGRKYSFLAFSSNQLRDRSAWFFAEHKKINCDDIRCWMGKFNQKNVAKCAARMGQCFSSTYATVEVGANEVNSMLPDVERNNYVFSDGIGIITPDLAGEVAEKLKLDSIPSAYQIRYAGFKGVVACWPAKGDGYRLSLRPSMNKFESTHTTLEICSWTRFQPGFLNRQIITLLSALEVSDDIFWKMQEGMLSRLNQMLVDADVAFDVLMKSCAEHGNAAAIMLSCGFSPQTEPHLRGMLTSIRAAQLWGLREKSRIFVLSGQWLMGVFDELGVLEQGQCFVQVSTPSLENCFSKHGSRFSETKNLQVVKGLVVIAKNPCLHPGDVRVLEAVDVPDLHHLHDCLVFPQKGDRPHTNEASGSDLDGDLYFVTWDENLIPPSKRSWIPMEYTPQESKLQARQVTIQHIIDFFVRNMVNEHLGAICNAHVVHADCSDYGALDEKCITLAELAATAVDFPKTGKLVTMPPRLKPKLYPDFMGKEQHQSYKSTKILGRLYRRIKDAYDEDIGDPDLNYVTGDIPYDTDLEVQGSADFIADAWEHKCSYDGQLSALLGQYKVKREEEVVTGQIWSMPKYNSRKQGELKERLKHSYSALKKEFRQIFEKLNSDVGELSDEEKNSLYEQKASAWYQVTYHPKWVKKSLDLQDKFPLNQEPGSSGTTVMLSFPWITVDYLARTKIRRRKFGNFDSTKPIDSLAKFLSERL. 1224
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00971 1223 PANTHER RNA-DEPENDENT RNA POLYMERASE 33 1215 IPR007855 GO:0003968
Seca4g00971 1223 Pfam RNA dependent RNA polymerase 440 1020 IPR007855 GO:0003968
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00971 Seca-Chr4 15667337 15672935 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00971 K11699 - gmx:100795178 2137.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00971 4 15667337 15672935 Seca4g00971 4 15667337 15672935 ECH