Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00964 ATGATGAGGCTCTTTATCCTTGCAATCTTTTCAAGCCTATTGCTGCTCAAACAACAAGTGAGCCTAGTTCTTGGAGACGTTGGTACTGCTTCTTCTTATGGACCCCCATATATACCTACTGCTTGTGAAGGAAATAGGCGAGAGCAGTTTCCACCAGGAAATCTATTTGTGGCTGTGAATGAAGGGTTGTGGGATAATGGGGCAGCCTGTGGAAGGAGATACAGAGTAAGGTGTATCAGTGGAAACAATAGGCCATGTAAAGGTGGTACTATCGACGTTAAGGTCGTTGATACCTGTGGAAGTTCCTCATGCCCCAACACCCTCCTCATGTCAAATGATGCCTTTACTGCCATCTCTCGCTTCCCTAATGCAAAAATCAACATTGAATATACACAGGATATGACGTTCCATTTGCTCTGA 420 0.4452 MMRLFILAIFSSLLLLKQQVSLVLGDVGTASSYGPPYIPTACEGNRREQFPPGNLFVAVNEGLWDNGAACGRRYRVRCISGNNRPCKGGTIDVKVVDTCGSSSCPNTLLMSNDAFTAISRFPNAKINIEYTQDMTFHLL. 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00964 139 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 28 130 IPR007112 -
Seca4g00964 139 PANTHER EG45-LIKE DOMAIN CONTAINING PROTEIN 3 132 - -
Seca4g00964 139 Pfam Lytic transglycolase 58 130 IPR009009 -
Seca4g00964 139 SUPERFAMILY Barwin-like endoglucanases 24 132 IPR036908 -
Seca4g00964 139 Gene3D - 26 132 IPR036908 -
Seca4g00964 139 CDD DPBB_EG45-like 26 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00964 Seca-Chr4 15549433 15550471 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00964 - - ccaj:109795996 220.705
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00964 4 15549433 15550471 Seca4g00964 4 15549433 15550471 ECH