Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00963 ATGGGTAGAAGGGGAATCCAACTATTTGATGAGAAAAGTGATGGGTTTTTCTCTGTCTGCAATTTGGGGTCTCAAGATGGGTACTATCATCCCGGAGGTTTGTTTGCCAGCGTTGGTCAAATGGGAATGGGGTTTGGTGTGCAACCAAACCCACCAAATCCTTCTGATTCACGGGACAATGGTGGCCTGAAACTTCCCTTTAATGAGTTCTACGTCAAGTATGTTCAGCCACTGGGGAAAGTTGAGATTTTTGGGGTTCAAGAGGAGGGAGTTAAGACCAAGAAGAAAAAAGGTGGCCTTACACTCAGAATCAAAATCAAGAATCCTTCGATCAGGAGATTGTTTAGTGGCGCAATTGCTGGGGCTATTTCTCGCACTGCTGTGGCACCCTTGGAGACTATTAGGACTCATTTGATGGTAGGAAGTAGTGGCCATTCTACCACTGAGGTGTTCCAAAATATTATGAAAACTGATGGTTGGAAGGGATTGTTTAGGGGTAATCTCGTTAATGTCATTCGGGTTGCACCTAGCAAGGCCATTGAGCTATTTGCTTATGATACTGTAAACAAGAACCTATCCCCAAAGCCTGGGGAGCAGTCCAAACTCCCAATTCCTGCATCATTGATAGCCGGTGCCTGCGCTGGAGTGAGTTCAACTATATGCACATACCCTCTTGAATTACTCAAGACTCGACTAACTATCCAGAGGGGAGTTTATAATGGTCTACTTGATGCATTCTTGAAAATAATTCGAGAGGAAGGTCCTGGAGAACTTTACAGAGGCCTCACTCCTAGTCTTATTGGAGTTATTCCATATTCTGCTACCAATTACTTTGCCTATGACACATTACGGAAAGCATACAGGAAAATCTTCAACCAAGAAAAGATTGGAAACATTGAAACCCTTTTGATTGGTTCAGCAGCTGGTGCTATTTCAAGTAGTGCAACTTTTCCACTTGAGGTGGCTCGCAAGCATATGCAAGTGGGAGCTCTCAGTGGAAGGCAGGTTTACAAAAATGTGGTTCATGCCCTTGTAAGCATATTGGAACAAGAAGGGATCCAAGGTTTATATAGAGGGCTAGGACCTAGTTGTATGAAGTTGGTGCCAGCTGCTGGTATCTCTTTCATGTGCTATGAAGCTTGCAAGCGCATACTCATAGATAATGAGGAGGAGGAATAA 1179 0.4394 MGRRGIQLFDEKSDGFFSVCNLGSQDGYYHPGGLFASVGQMGMGFGVQPNPPNPSDSRDNGGLKLPFNEFYVKYVQPLGKVEIFGVQEEGVKTKKKKGGLTLRIKIKNPSIRRLFSGAIAGAISRTAVAPLETIRTHLMVGSSGHSTTEVFQNIMKTDGWKGLFRGNLVNVIRVAPSKAIELFAYDTVNKNLSPKPGEQSKLPIPASLIAGACAGVSSTICTYPLELLKTRLTIQRGVYNGLLDAFLKIIREEGPGELYRGLTPSLIGVIPYSATNYFAYDTLRKAYRKIFNQEKIGNIETLLIGSAAGAISSSATFPLEVARKHMQVGALSGRQVYKNVVHALVSILEQEGIQGLYRGLGPSCMKLVPAAGISFMCYEACKRILIDNEEEE. 393
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00963 392 PRINTS Mitochondrial carrier protein signature 259 277 IPR002067 GO:0055085
Seca4g00963 392 PRINTS Mitochondrial carrier protein signature 113 126 IPR002067 GO:0055085
Seca4g00963 392 PRINTS Mitochondrial carrier protein signature 126 140 IPR002067 GO:0055085
Seca4g00963 392 PRINTS Mitochondrial carrier protein signature 305 327 IPR002067 GO:0055085
Seca4g00963 392 PRINTS Mitochondrial carrier protein signature 166 186 IPR002067 GO:0055085
Seca4g00963 392 PRINTS Mitochondrial carrier protein signature 217 235 IPR002067 GO:0055085
Seca4g00963 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 202 286 IPR018108 -
Seca4g00963 392 Gene3D Mitochondrial carrier domain 105 390 IPR023395 -
Seca4g00963 392 FunFam Adenine nucleotide transporter BT1, chloroplastic/mitochondrial 106 389 - -
Seca4g00963 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 108 191 IPR018108 -
Seca4g00963 392 PANTHER SOLUTE CARRIER FAMILY 25 107 385 - -
Seca4g00963 392 ProSiteProfiles Solute carrier (Solcar) repeat profile. 296 384 IPR018108 -
Seca4g00963 392 Pfam Mitochondrial carrier protein 201 289 IPR018108 -
Seca4g00963 392 Pfam Mitochondrial carrier protein 110 192 IPR018108 -
Seca4g00963 392 Pfam Mitochondrial carrier protein 296 388 IPR018108 -
Seca4g00963 392 SUPERFAMILY Mitochondrial carrier 109 380 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00963 Seca-Chr4 15529116 15533772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00963 1 391 Organic Solute Cotransporters AT4G32400 68.329 0.0 525
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00963 K14684 - qsu:111999876 633.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00963 4 15529116 15533772 Seca4g00963 4 15529116 15533772 ECH
Seca4g00963 4 15529116 15533772 Seca4g00963 4 15529116 15533772 PCT