Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00925 ATGGGTATTGCTCCTGCTAGATACCCATTTGGGATCCCTCTCCACTCCAACGGTGCTCCCCTTCGCAAAGTGGTGGATTGCTCAACCTCACACTCCCACTTCCCCCTTCATCTTGACCTTTCAAGAATTACCTTGTGCCCACGTTCTGATTCTGAGGGATTAACTGATCGAGTATGTGCACGACCTGATATTGATGATTTTTACTGGGAGAAAGTTCCAACACCCATTCTTGACATGGTTGAAAATCCTCTTTTCTTGAAGAACTTATCCCTCAAGGAACTGAAACAACTAGCTGATGAAATCCGCTTGGATTTGTCTTCTATTATGTCAAGCACACAAATACCACTGAAAGCAAGTATGGCAGTGGTGGAGCTGACAGTTGCAATACATCATGTTTTTCATGCTCCAGTAGACAAGATATTGTGGGATGTTGGGGATCAAACATATGCACATAAGATTCTTACAGGAAGGCGATCACTCATGAAGACAGTGAGAAAAAAGAATGGCCTTTCTGGTTTCACATCCCGATTTGAGAGTGAATATGATGCATTCGGTTCAGGTCATGGATGCAACAGTATTTCTGCTGCACTTGGCATGGCAGTTGCACGTGATATTAAGGGGAGGCGAGAACGTGTAGTTGCAGTCATCAGCAATTGCACAACTATGGCTGGTCAGGTGTATGAGGCAATGAGCAATGCTGGATATTTGGACTCAAATATGGTTGTGATTTTGAATGACAGCCGGCACTCTTTACTCCCCAAAATTGAGGAGGGCCCTAAGACATCTGTCAATGCCCTATCTAGTACCCTAAGCAGGCTCCAGTCCAGTAAATCTTTCCGAAGATTTAGAGAAGCTGCTAAGGGTGTTACAAAACGAATTGGTAGGGGTATGCATGAATGGGCAGCTAAAGTTGATGAATATGCCCGTGGTATGATGGGTCCACTAGGTTCTACTCTTTTTGAAGAGCTTGGGTTGTACTACATAGGTCCAGTGGATGGACACAATATTGAAGATCTAATATGTGTTCTGCAAGAAGTAGCTTCCCTGGATTCAATGGGTCCTGTCTTGGTTCATGTGATAACTGATGAAAATCAGGCAGAAGAAAATGAGAAAAGTGATATAACAGACAGGCAGCAGGATGAATCTGTTGAAACTGATTCGTTAGATTGCACTGTTCACCCTCGAACATATGGTGATTGCTTTGTGGAGACTTTGGTTGCAGAAGCAGAGAAGGACAAAGATATTGTGGTTGTTCATGCAGGAGTCATGATGGAGCCATCACTTGAACTGTTTCAGGAAAAGTTTCCAGATAGGTTTTTTGATGTGGGAATGGCTGAGCAACATGCAGTCACATTTGCTTCTGGTTTGTCATGTGGTGGATTGAAGCCATTTTGCATTATACCTTCTTCCTTTCTACAAAGAGCCTATGACCAGGTGGTTCATGATGTTGATCAACAGAAAACTCCAGTATGTTTTGTCATTACAAGTGCAGGACTGGTAGGTTCTGATGGACCACTCCATTGTGGGGCATTTGATATAACCTTTATGTCATGCTTGCCAAACATGGTTGTCATGGCGCCATCTGATGAGGTTGAACTGATGCACATGGTGGCTACTGCTACTCGTATCAATGATCGGCCAGTTTGCTTTCGGTATCCTAGGGGTGCCTTGGTTAGTAAAGACCACACTATTCATGATGGAATCCCCATTAAGGTTGGGAAAGGAAGAATTCTTGTTGAAGGTAAAGATGTTGCTTTACTGGGATATGGATCGATGGTTCAGAACTGTCTGAAGGCTCATTCACTTCTCGCAAAGCTTGGCATTGAGGTGACAGTTGCTGATGCAAGGTTCTGCAAGCCCCTTGACATCAAGCTTCTGAGACAGCTTTGTAAACACCACTCATTCCTAATTACTGTTGAGGAAGGATCTATTGGAGGTTTTGGTTCCCATGTTGCTCAGTTTATTGCACTTGATGGACTGCTTGATGGAAGAATAAAGTGGCGACCAATTGTCTTACCAGACAGTTATATCGAGCATGCATCACCAAATGAGCAGCTTGACCAAGCAGGGTTGACTGGACATCACATTGCTGCCACCGCATTGAGTTTGCTAGGCCGTACCCGTGAAGCTCTCCTCTTCATGTGTTCCTGA 2151 0.4412 MGIAPARYPFGIPLHSNGAPLRKVVDCSTSHSHFPLHLDLSRITLCPRSDSEGLTDRVCARPDIDDFYWEKVPTPILDMVENPLFLKNLSLKELKQLADEIRLDLSSIMSSTQIPLKASMAVVELTVAIHHVFHAPVDKILWDVGDQTYAHKILTGRRSLMKTVRKKNGLSGFTSRFESEYDAFGSGHGCNSISAALGMAVARDIKGRRERVVAVISNCTTMAGQVYEAMSNAGYLDSNMVVILNDSRHSLLPKIEEGPKTSVNALSSTLSRLQSSKSFRRFREAAKGVTKRIGRGMHEWAAKVDEYARGMMGPLGSTLFEELGLYYIGPVDGHNIEDLICVLQEVASLDSMGPVLVHVITDENQAEENEKSDITDRQQDESVETDSLDCTVHPRTYGDCFVETLVAEAEKDKDIVVVHAGVMMEPSLELFQEKFPDRFFDVGMAEQHAVTFASGLSCGGLKPFCIIPSSFLQRAYDQVVHDVDQQKTPVCFVITSAGLVGSDGPLHCGAFDITFMSCLPNMVVMAPSDEVELMHMVATATRINDRPVCFRYPRGALVSKDHTIHDGIPIKVGKGRILVEGKDVALLGYGSMVQNCLKAHSLLAKLGIEVTVADARFCKPLDIKLLRQLCKHHSFLITVEEGSIGGFGSHVAQFIALDGLLDGRIKWRPIVLPDSYIEHASPNEQLDQAGLTGHHIAATALSLLGRTREALLFMCS. 717
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00925 716 Pfam 1-deoxy-D-xylulose-5-phosphate synthase 77 361 IPR005477 GO:0008661|GO:0016114
Seca4g00925 716 Pfam Transketolase, C-terminal domain 573 696 IPR033248 -
Seca4g00925 716 CDD TPP_PYR_DXS_TK_like 401 554 - -
Seca4g00925 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 395 583 IPR029061 -
Seca4g00925 716 SUPERFAMILY Thiamin diphosphate-binding fold (THDP-binding) 74 456 IPR029061 -
Seca4g00925 716 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 573 705 - -
Seca4g00925 716 CDD TPP_DXS 116 361 IPR005477 GO:0008661|GO:0016114
Seca4g00925 716 SMART Transket_pyr_3 395 560 IPR005475 -
Seca4g00925 716 MobiDBLite consensus disorder prediction 363 386 - -
Seca4g00925 716 NCBIfam 1-deoxy-D-xylulose-5-phosphate synthase 79 702 IPR005477 GO:0008661|GO:0016114
Seca4g00925 716 Gene3D - 69 365 - -
Seca4g00925 716 MobiDBLite consensus disorder prediction 362 386 - -
Seca4g00925 716 Hamap 1-deoxy-D-xylulose-5-phosphate synthase [dxs]. 76 705 IPR005477 GO:0008661|GO:0016114
Seca4g00925 716 Gene3D - 573 704 IPR009014 GO:0003824
Seca4g00925 716 FunFam 1-deoxy-D-xylulose-5-phosphate synthase 394 562 - -
Seca4g00925 716 Gene3D - 395 566 - -
Seca4g00925 716 SUPERFAMILY TK C-terminal domain-like 568 704 IPR009014 GO:0003824
Seca4g00925 716 PANTHER 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED 52 711 IPR005477 GO:0008661|GO:0016114
Seca4g00925 716 Pfam Transketolase, pyrimidine binding domain 396 557 IPR005475 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00925 Seca-Chr4 15140020 15151603 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00925 433 655 Acyl Lipid Metabolism Gene Families AT1G55510 25.000 1.41e-08 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00925 K01662 - gmx:100787937 1220.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00925 4 15140020 15151603 Seca4g00925 4 15140020 15151603 ECH